utrecht-university
There are 3 repositories under utrecht-university topic.
- recordlinkage
J535D165 / recordlinkage
A powerful and modular toolkit for record linkage and duplicate detection in Python
Language:Python 907 - asreviewLanguage:Python 550
haddocking / pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
Language:Python 350Numbers concerning COVID-19 disease cases in The Netherlands by RIVM, LCPS, NICE, ECML, and Rijksoverheid.
Language:Jupyter Notebook 143DeepRank / Deeprank-GNN
Graph Network for protein-protein interface
Language:Python 111- pyalexLanguage:Python 98
Predict the binding affinity of protein-protein complexes from structural data
Language:Python 89- haddock3
Official repo of the modular BioExcel version of HADDOCK
Language:Python 83 - synergy-dataset
asreview / synergy-dataset
SYNERGY - Open machine learning dataset on study selection in systematic reviews
Language:Python 50 - awesome-utrecht-university
UtrechtUniversity / awesome-utrecht-university
A curated list of awesome open source projects from Utrecht University.
Language:Python 43 Set of useful HADDOCK utility scripts
Language:Python 42- yoda
A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.
Language:HTML 40 One downloader for many scientific data and code repositories! DOI :open_hands: Data
Language:Python 35This is a library of latex classes for creating documents according to the Utrecht University style guide.
Language:TeX 30Extension that adds Covid-19 related datasets to ASReview
Language:Python 27- asreview-insights
Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB
Language:Python 27 - asreview-makita
Workflow generator for simulation studies using the command line interface of ASReview LAB
Language:Python 26 driule / webgl-path-tracer
Game and Media Technology MSc at Utrecht University
Language:TypeScript 26ekatrukha / BigTrace
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
Language:Java 21UU-cellbiology / ZstackDepthColorCode
Z-stack Depth Colorcode ImageJ FIJI plugin
Language:Java 21Graph Network for protein-protein interface including language model features
Language:Python 20Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
Language:Python 19Material to run the HADDOCK antibody-antigen modelling protocol
Language:Python 19Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
Language:Python 19R Cafe community event Utrecht University
Language:HTML 19- GeoNewsMiner
lorellav / GeoNewsMiner
The GeoNewsMiner (GNM): An interactive spatial humanities tool to visualize geographical references in historical newspapers
Language:Jupyter Notebook 16 sodascience / awesome-citizen-science-nl
A curated list of awesome Citizen Science Projects in the Netherlands
Language:Python 16Tool to preprocess datasets for ASReview
Language:Python 15ASReview extension to generate wordcloud from data files.
Language:Python 15- getting-started
Getting started with GitHub @UtrechtUniversity
Detection of Molecules plugin for ImageJ, Utrecht University
Language:Java 14Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
Language:HTML 13- osmenrich
Enrich sf data with geographic features from OpenStreetMaps.
Language:R 13 ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
Language:Java 13Docking benchmark 5 - cleaned and ready to use for HADDOCK
Language:Roff 12- ricgraph
Ricgraph - Research in context graph
Language:Python 12