pacbio-data

There are 1 repository under pacbio-data topic.

tjiangHIT / cuteSV
Long read based human genomic structural variation detection with cuteSV
oxford-nanopore pacbio-data structural-variation
Language:Python 258
bcgsc / arcs
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
c-plus-plus science bioinformatics assembler scaffold genome 10xgenomics graph nanopore-sequencing oxford-nanopore pacbio-data
Language:C++ 95
HiPhase
PacificBiosciences / HiPhase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
hifi phasing structural-variants variants pacbio-data short-tandem-repeats
Language:Rust 78
deepomicslab / SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
hla-typing haplotype loh hla-sequence nanopore pacbio-data phase cancer local-assembly reads-binning allelic-imbalance genotype-frequency loss-of-heterozygosity immunity human-leukocyte-antigens
Language:C++ 43
LRSDAY
yjx1217 / LRSDAY
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
genomics genome-assembly genome-annotation pacbio-data oxford-nanopore yeastgenome yeast
Language:Perl 31
tjiangHIT / rMETL
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
variant-calling pacbio-data nanopore-sequencing mei realignment transposons mei-detection
Language:Python 18
hitbc / rMETL
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
variant-calling pacbio-data nanopore-sequencing mei
Language:Python 6
niaid / UMI-pacbio-pipeline
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
network-filtering pacbio pacbio-data umi unique-molecular-identifiers
Language:Python 6
IBCHgenomic / panscape
reads to genome, pangenome graphs, summarize and analyze
bioinformatics nanopore-reads nanopore-sequencing pacbio-data pacbio-sequencing
Language:Rust 2
xapple / pacmill
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
bioinformatics-pipeline 16s-rrna pacbio-data dna-sequences pdf-reports
Language:Python 2
comery / HIFI-barcode-pacbio
A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform
barcode pacbio-data perl
Language:Perl 1
hormiphora
conchoecia / hormiphora
Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.
genomics ctenophora annotation hi-c pacbio pacbio-data
Language:HTML 1
KatjaKo / PacBio_AMF
A workflow for processing CCS reads of AMF to ASVs using DADA2
amplicon-sequence-variants arbuscular-mycorrhizal-fungi dada2 pacbio-data
Language:R 1
AukeHaver / salmonella_methylation_pipeline
SMP: A Salmonella Methylation analysis Pipeline
epigenetics annotation de-novo-assembly hybrid-assembly pacbio-data
Language:R 0
fcunial / Revant
De novo repeat inference from long reads
repeats de-novo-assembly pacbio-data transposon microsatellite
Language:Java 0
IBCHgenomic / genomeassembly-pacbiohifi
pacbioHifi genome assembly benchmarks
bioinformatics bioinformatics-data genome-analysis genome-assembly pacbio-data pacbio-sequencing genome-alignment genome-sequencing
Language:HTML
IBCHgenomic / pacbio-nanopore-repeat-coverage
pacbio/oxford nanopore long reads repeat coverage estimation
bioinformatics genome-analysis genome-assembly pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing
Language:Python
IBCHgenomic / pacbio-polyATGC-remove
polyATGC pacbio/oxford nanopore estimator
bioinformatics genome-analysis genome-annotation pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi
Language:Python
IBCHgenomic / pacbiohifi-desktop
a streamlit application for graphical analyisis of pacbiohifi reads
bioinformatics bioinformatics-analysis genome-analysis pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi sequencing-data sequencing-analysis
Language:Python
IBCHgenomic / pacbiohifi-read-analyzer
pacbiohifi read analyzer using recursion
bioinformatics bioinformatics-tool pacbio pacbio-data pacbio-hifi-sequencing-reads pacbiohifi
Language:Python
IBCHgenomic / pacbiohifi-report-classifier
pacbiohifi report classifier for any sequencing startups
bioinformatics genome-analysis pacbio-data pacbio-sequencing pacbiohifi python3
Language:Python
jacobwindsor / SQANTIExplorer
Inter-sample analysis of SQANTI classifications
rna-seq rna-sequencing tgs pacbio pacbio-data pacbio-iso-seq bioinformatics bioinformatics-tool bioinformatics-visualization sqanti genome-browser liftover
Language:R