KatjaKo / PacBio_AMF

A workflow for processing CCS reads of AMF to ASVs using DADA2

AMF communities under simulated short-term drought in a long-term farming experiment with organic and conventional management practices.

Kozjek K, et. al. (2021): Long-term agricultural management impacts arbuscular mycorrhizal fungi more than short-term experimental drought. Applied Soil Ecology. http://doi.org/10.1016/j.apsoil.2021.104140

This repository contains all the codes and other documents related to the processing of CCS reads to ASVs using DADA2

- Scripts

This folder contains scripts related to bioinformatic analyses with DADA2 (script_bioinformatics) and statistics analyses (script_brms, script_multivariate_stats).

- Data

This folder contains data generated through bioinformatics and statistics; fasta, rds and csv files.

- Results

This folder contains results.