short-tandem-repeats

There are 0 repository under short-tandem-repeats topic.

• quinlan-lab / STRling

  Detect novel (and reference) STR expansions from short-read data

  hacktoberfestnim-langshort-tandem-repeatsstrwhole-genome-sequencing
  Language:Nim 60
• HiPhase

  PacificBiosciences / HiPhase

  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

  hifiphasingstructural-variantsvariantspacbio-datashort-tandem-repeats
  Language:Rust 55

• unique379r / strspy

  STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.

  short-tandem-repeatsstrforensic-analysisforeniscslongreadpacbiooxford-nanopore
  Language:Shell 15

• WGLab / NanoRepeat

  NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

  bioinformaticsgenome-analysisnanopore-sequencingrepeat-detectionshort-tandem-repeatsgenomicspacbio-sequencingsequencing
  Language:Python 15

• PengJia6 / MSHunter

  Microsatellite genotyping

  microsatellitesshort-tandem-repeatsgenotypingphasing
  Language:Python 2

• ShawHahnLab / chiimp

  Computational, High-throughput Individual Identification through Microsatellite Profiling

  microsatellitesr-packageshort-tandem-repeatstandem-repeats
  Language:R 2

• aryarm / str_ase

  Allele-specific expression (ASE) for short tandem repeats (STRs)

  short-tandem-repeatssnakemakeallele-specific-expressionlinear-regression
  Language:Python 1

• j-andrews7 / strprofiler

  A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.

  model-testingsample-mixture-detectionshort-tandem-repeatsstr-profiling
  Language:HTML 1

• ShawHahnLab / chiimp-paper

  Supporting code for the microsatellite genotyping paper introducing CHIIMP

  microsatellitesreproducible-researchshort-tandem-repeatstandem-repeats
  Language:Makefile 1

• serena-aneli / recombulator-x

  :dna: recombination and mutation rates inference from polymorphisms (STRs, SNPs and INDELs) along the X chromosome

  forensic-geneticsforensics-toolsrecombinationshort-tandem-repeatsx-chromosomepedigrees
  Language:Jupyter Notebook 0

• MattesMrzik / repeat_util

  Detection and classfication of short tandem repeats in read data

  short-tandem-repeatssingularity-container
  Language:C++

• rashidalabri / awesome-repeat-dna

  🧬 A curated list of awesome resources for repeat DNA research

  awesometandem-repeatsshort-tandem-repeatsdnagenomics