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darrin t schultz (conchoecia)

conchoecia

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Company:University of Vienna

Location:Vienna, Austria

Twitter:@conchoecia

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darrin t schultz's repositories

odp

oxford dot plots

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pauvre

Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.

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genome_assembly_pipelines

A collection of snakemake scripts to streamline genome annotation

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chep

Calculate Heterozygosity with Pileup

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cuttlery

CUTTlery: Codon Usage Table Tools and Bayesian determination of ORF protein coding-ness.

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gloTK

genomes of luminous organisms toolkit

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brizzy

A program to easily take spectra with Ocean Optics spectrometers. It's a breeze to use.

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fasta_stats

standalone fasta_stats from Meraculous

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fastest_rc_python

what is the fastest way to get the reverse complement of a DNA string in python

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beroe_forskalii_mitogenome

Data related to the Beroe forskalii mitogenome manuscript.

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Bioinformatics-tutorials

Tutorials on common bioinformatics skills for beginners

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hdb

Het De Bruijn graph - for finding heterozygous genome regions in k-mer space.

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hormiphora

Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.

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yabtap

Yet another bulk transcriptome assembly pipeline

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chromsim

NA

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nccb_website

website for Northern California Computational Biology group

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bioawk

BWK awk modified for biological data

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ConservFinder

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cypridina.github.io

Test website for GLO

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dev-notes

Development notes for bioinformatics and other things.

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DPGB

dotplot + genome browser figure generator for genome assembly

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emacs

Files used in customizing emacs

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fast5_in_ref

Subset of fast5 files contained in a fastq, BAM, or SAM file.

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gser

genome size estimation rarefaction

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Illumina_trimming_pipeline

This pipeline trims HiSeq shotgun, Dovetail Chicago, and HiC data.

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NCBI_assem_summary

Generate a summary spreadsheet for genomes from NCBI.

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ncbigenomes

A script that QCs and plots how many chromosome-scale genomes are on NCBI

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odontosyllis_undecimdonta_luciferase

This repository contains analyses required to recreate the analyses found in Schultz, Kotlobay, et al. 2018

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rbh-specs

specifications for the rbh file formats used by the odp software.

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