unique-molecular-identifiers

There are 0 repository under unique-molecular-identifiers topic.

Daniel-Liu-c0deb0t / UMICollapse
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
java hamming string-similarity string-search deduplication unique-molecular-identifiers fastq data-structures umis
Language:Java 53
niaid / UMI-pacbio-pipeline
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
pacbio umi pacbio-data network-filtering unique-molecular-identifiers
Language:Python 4
sfilges / umiAnalyzer
Tools for analyzing UMIErrorCorrect output
unique-molecular-identifiers targeted-sequencing variant-analysis
Language:R 0
amatov / TumorAgnosticUMI
colon-cancer rectal-cancer colon-adenoma detect-recurrence predict-relapse rectal-adenoma scikit-learn ultra-deep-sequencing tumor-agnostic-approach clinical-trials blacklisting-filter error-rates lasso-regression limit-of-detection unique-molecular-identifiers mutation-score fragmentomics dna-fragmentation-patterns detection-error-rates sensitivity-specificity
Language:R