HIT Bioinformatics Centre

HIT Bioinformatics Centre's repositories

LAMSA

Long Approximate Matches-based Split Aligner

Language:CMIT12 30

deBGA

de Bruijn Graph-based read aligner

Language:C11 40

deSAMBA

deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches

Language:CMIT10 1 1

deBWT

A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.

Language:C6 40

rMETL

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

Language:PythonMIT6 50

deGSM

de Bruijn Graph Constructor in Scalable Memory

Language:C++4 30

deSPI

fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing

Language:C++3 20

xQTLimp

xQTLImp: efficient and accurate xQTL summary statistics imputation

Language:C++3 10

AnalysisScripts

Language:PythonMIT2 60

cuteSV

Long read based human genomic structural variation detection with cuteSV

Language:PythonMIT2 10

deSALT

deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads

MIT2 30

panSVR

An NGS SV caller based on pan-genome

Language:CMIT2 40

rCANID

read Clustering and Assembliy-based Novel insertion Detection tool

Language:PythonMIT2 30

rMFilter

Acceleration of long read-based structure variation calling by chimeric read filtering

Language:C++2 30

TideHunter

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

Language:CMIT1 20

deBGA-VARA

Fast variation-aware read aligner

Language:C010

hitbc.github.io

Language:CSS040

rHAT

Alignment tool for noisy long reads

Language:C++MIT030

ubwt

ubwt: Uni-path BWT utilities

Language:C030