Gaurav's repositories
nextflow-pacbiohifi
a nextflow pacbiohifi for the genome assembly from the pacbiohifi. It also includes supports for the visualization and genome assessment.
pacbiohifi-analyzer
a pacbiohifi analyzer for pacbiohifi reads from sequence analysis to the graph alignments
arabidopsis-maf-cap-accessions
arabidopsis-maf-cap-accessions. genome extraction, alignments, visualization, phylogenomics, ancestral tree
awk-pacbiohifi
awk code for pacbiohifi alignments from verkko and other genome assembly methods
bacterial-site-checker
string search for the direct detection of the insertion elements and clipping them off
bacterial-tolerance-rate-svm
svm approach to predict the tolerance rates in bacterial infections. It uses eps-regression.
cscading-style-sheets-genome
cascading style sheets for the genome analysis, javascript and pacbiohifi
devops-system
A devops ruby system utils to get your system information on the clusters and computing storage
docker-version-check
a web docker tooling chain for the docker versioning available.
evolutionCal
ruby implementation of similarity score function
gawk-awk-paf-alignments
gawk and awk combined functions for working with pacbiohifi aligned data.
genome-datautilities
genome-datautilies for genome analysis and also sequence and string manipulations.
genome-visualization-tracks
embedding the genome visualization tracks in the javascript for the visualization
HiPhase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
lastz-alignment-awk
lastz alignment sorting and plotting the alignment length
maf-diagonal-information
awk implementation for maf alignments
matlab-gene-models
normalization of the gene-expression for machine learning
miniprot-protein-annotator
from protein alignments to deep learning preparatory.
pacbiohifi-meryl
plotting tools for pacbiohifi meryl hapmers and yak kmers
pacbiohifi-read-assimilator
a pacbiohifi read check for the quick view of the read types.
pbs-configure-R
R code for the PBS users for generating and working on the PBS clusters
proteinalignment-annotation-gem
a ruby gem for protein alignments. index the protein alignments, extract the regions of interest, extract the locus, extract the alignments
protoyping-matlab-javascript
a javascript element selection prototyping for matlab machine learning.
rasa-sequence
rasa chatbot for machine and deep learning applications.
sentence-transformers
Multilingual Sentence & Image Embeddings with BERT
shiny-metabolic_analysis
shiny application for metabolic analysis.
streamlit-pacbiohifi
a streamlit component for reading and plotting the PacBioHiFi sequencing reads.
streamlit-pangraphs-pangenome
a pangraph visualization and pangenome visualization component for the pangenome.
streamlit-up-application
multipage web application for Univeristat Potsdam DevOPs.