tjiangHIT

cuteSV

Long read based human genomic structural variation detection with cuteSV

rMETL

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

sv-benchmark

Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data

rMFilter

Acceleration of long read-based structure variation calling by chimeric read filtering

Thesis

博士论文（PhD Thesis）

rCANID

read Clustering and Assembliy-based Novel insertion Detection tool

VISOR

VarIant SimulatOR for short, long and linked reads

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

bioconda-recipes

Conda recipes for the bioconda channel.

chm1_scripts

cigar

simple library for dealing with SAM cigar strings

cuteFC

Regenotyping structural variants through an accurate and efficient force-calling method

deSALT

deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads

EFArticles

EyreFree's articles.

memusg

A 'time'-like utility for Unix that measures peak memory usage

Posters

A poster exhibited in 5th HIT CS PhD Forum.

README

README文件语法解读，即Github Flavored Markdown语法介绍

Sniffles

Structural variation caller using third generation sequencing

The-commands-of-the-evaluation

This is the command of Long-read sequencing settings for efficient structural variation detection based on the comprehensive evaluation. People can read/follow the commands clearly and conveniently.

wtdbg2

A fuzzy Bruijn graph approach to long noisy reads assembly