local-assembly

There are 0 repository under local-assembly topic.

nygenome / lancet
Microassembly based somatic variant caller for NGS data
somatic-mutations cancer-genomics variant-callers debruijn-graph snvs indels local-assembly
Language:C 153
brentp / indelope
find large indels (in the blind spot between GATK/freebayes and SV callers)
genomics variant-calling k-mer-counting vcf nim-lang local-assembly genome-assembly
Language:Nim 39
deepomicslab / SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
allelic-imbalance cancer genotype-frequency haplotype hla-sequence hla-typing human-leukocyte-antigens immunity local-assembly loh loss-of-heterozygosity nanopore pacbio-data phase reads-binning
Language:C++ 34

nygenome / lancet