There are 0 repository under haplotype topic.
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“
Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
haplotype estimation, custom panel creation, and genotype imputation
*HaploCrackling* -- The Crackling-based method for variant-aware, whole-genome CRISPR-Cas9 target detection
Y-DNA and mtDNA Haplotyping for WeGene, It features DFS algorithm and specific rules to search the most appropriate terminal haplotype based on haplogroup tree which should contain SNP information with position and derived mutation.
This is the data repository for the publication of the same name.
Repository for running SeekDeep in a Docker Container