haplotype
There are 0 repository under haplotype topic.
zengxiaofei / HapHiC
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
Language:Python 238- Language:C++ 88
deepomicslab / SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
Language:C++ 50Chenglin20170390 / Haplotype-diversity
This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“
Language:Python 32SAMtoBAM / PhasedDiploidGenomeAssemblyPipeline
Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
Language:R 24- Language:Python 21
cannin / snp_plotter
snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
Language:PostScript 19pdimens / harpy
Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
Language:Python 18- Language:R 3
- Language:Shell 3
- Language:C 2
DanielRCA / NCR-mtDNA_ampliconbasedngs
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
Language:Shell 2esohkevin / ei-imputationservice
haplotype estimation, custom panel creation, and genotype imputation
Language:Nextflow 2- Language:R 2
bmds-lab / Crackling-phased
*HaploCrackling* -- The Crackling-based method for variant-aware, whole-genome CRISPR-Cas9 target detection
Language:C++ 1mahui-cn / weapp-haplotyping
Y-DNA and mtDNA Haplotyping for WeGene, It features DFS algorithm and specific rules to search the most appropriate terminal haplotype based on haplogroup tree which should contain SNP information with position and derived mutation.
Language:Python 0- Language:Python 0
zjwinn / Profiling-of-FHB-Resistance-QTL-Haplotypes-Through-MM-GBG-and-ML
This is the data repository for the publication of the same name.
0colbyford / SeekDeep-Docker
Repository for running SeekDeep in a Docker Container
Language:Dockerfile- Language:Jupyter Notebook
