BHKLAB

PharmacoGx

R package to analyze large-scale pharmacogenomic datasets.

med-imagetools

Transparent and reproducible medical image processing pipelines in Python.

PharmacoDB-JS

Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.

ORCESTRA

ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

consensusOV

Implements four major subtype classifiers for high-grade serous (HGS) ovarian cancer.

CoreGx

Shared code for both PharmacoGx and RadioGx

GraphComm

metriclearning

Metric Learning on L1K, and other datasets

readii

Radiomic Extraction and Analysis for DICOM Images (READII)

wCI

Modified Concordance Index for pharmacological readout

AnnotationGx

An R package to query various bio/chem-informatics databases APIs to construct annotation files.

ORCESTRA-api

SYNERGxDB

SYNERGxDB is a comprehensive database to explore synergistic drug combinations for biomarker discovery.

BrachyNewLoss

BrachyTransferLearning

CervixRadiomics

ptl-oar-segment

synthLethal

XevaDB

XevaDB is a database for PDX pharmacogenomic data.

XevaDI

The XevaDI is a python package that transforms the CSV files from the Xeva set to create the database table for XevaDB.

.github

cinet

ClinSets

R Data Package for clinical multimodal data

cosineDistr

Simulations for 'On the Distribution of cosine similarity with application to biology.'

DrugCell-Reusability-Report

JAKSTAT

PSet generation scripts for datasets shared by JAK STAT partners.

PredictioR

Radiomics-web

SCARF

SignatureSets

Compendium of published molecular signatures