ofgulban

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Brain Innovation

Maastricht, The Netherlands

https://orcid.org/0000-0001-7761-3727

Omer Faruk Gulban's repositories

segmentator

3D MRI data exploration and segmentation tool.

Language:PythonBSD-3-Clause73 11 74

iphigen

A command-line program for n-dimensional image enhancement and color balancing.

Language:PythonBSD-3-Clause22 4 3

bvbabel

A lightweight Python library for reading & writing BrainVoyager file formats.

Language:PythonMIT17 5 27

slowest-particle-simulator-on-earth

A half-serious project to generate **very** serious brain explosions.

Language:PythonBSD-3-Clause15 3 1

compoda

Simplex space operations for compositional data implemented in Python.

Language:PythonBSD-3-Clause13 6 1

flooding_brains

Creating mesmerizing brain animations by playing with geodesic distances.

Language:PythonMIT5 20

LAYNII_extras

Auxiliary scripts, bits & pieces built around LayNii

Language:PythonBSD-3-Clause5 3 1

meso-MRI

Processing scripts for in vivo mesoscopic MRI at 0.35 mm isotropic resolution.

Language:PythonBSD-3-Clause3 20

cortical-auditory-atlas

Resources from our human cortical auditory areas project.

Language:MATLABBSD-3-Clause1 20

exploding_brains

Particle simulations for exploding brains in Julia.

Language:JuliaBSD-3-Clause1 30

k_particles

OHBM 2023 Brainhack project

Language:PythonBSD-3-Clause1 20

minimalist_psychopy_examples

Simple Psychopy scripts.

Language:PythonUnlicense1 20

mp2ragelib

MP2RAGE functions implemented in the way I understand better :)

Language:PythonBSD-3-Clause1 20

2022_OHBM_brainhack_proceedings

Templates for the hackathon proceedings

Language:TeXUnlicense010

birdbrain

A library for viewing songbird brain atlases (European starling, Canary, Zebra finch, Pigeon, Mustached bat)

Language:Jupyter NotebookBSD-3-Clause020

BrainBox

BrainBox is a web application that let's you annotate and segment 3D brain imaging data in real time, collaboratively.

Language:JavaScriptNOASSERTION020

connectome_atlas_conversions

Various Nifti, Cifti, Gifti conversions...

Language:MATLABBSD-3-Clause020

fmriflows

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

Language:Jupyter NotebookBSD-3-Clause020

gif_your_nifti

Create gifs from nifti files.

Language:PythonBSD-3-Clause020

graynet

Subject-wise networks from structural MRI (thickness, gray matter density, curvature, gyrification)

Language:Jupyter NotebookMIT020

heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts

Language:PythonNOASSERTION020

minimalist_cython_examples

Simple cython examples.

Language:PythonUnlicense020

neuroelf-matlab

NeuroElf (MATLAB)

Language:MatlabNOASSERTION020

ofgulban.github.io

Personal page https://ofgulban.github.io/.

Language:HTML010

openMorph

Curated list of open-access databases with human structural MRI data

Language:Jupyter Notebook010

OpenScienceRoom2019

Schedule and resources from the OHBM Open Science Room: Rome 2019

010

parcellation_fragmenter

Fragments FreeSurfer parcellation annotation in N-equal sized parcels

Language:Jupyter NotebookBSD-3-Clause020

pydeface

defacing utility for MRI images

Language:PythonMIT020

scikit-image

An old version of scikit-image modified to work with another package (https://github.com/ofgulban/segmentator)

Language:PythonNOASSERTION010

VASOlib

VASO MRI pulse sequence related equations implemented for self study purposes :)

Language:PythonBSD-3-Clause020