neuroimaging-analysis

There are 1 repository under neuroimaging-analysis topic.

• bioimagesuiteweb / bisweb

  This is the repository for the BioImage Suite Web Project

  webassemblyneuroimaging-analysismedicalimage-processingniftiviewerfmrinih-brain-initiative
  Language:JavaScript 76

• muschellij2 / fslr

  FSL-R Interface package

  fslrfslneuroimagingneuroimaging-data-scienceneuroimaging-analysis
  Language:R 41

• BrainDynamicsUSYD / NeuroPattToolbox

  MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney

  neuroscience-methodsneuroimaging-analysisoptical-flow
  Language:MATLAB 14

• InsightSoftwareConsortium / ITKSkullStrip

  Perform automatic skull-stripping for neuroimage analysis

  itk-moduleneuroimagingneuroimaging-analysis
  Language:C++ 11

• slamballais / QDECR

  The QDECR package for vertex-wise analyses in R

  brainmrineuroimagingneuroimaging-analysisrvertex-wisevertex-wise-analyses
  Language:R 11

• liu-yikang / rat_rsfmri_preprocessing

  Preprocessing toolbox for rat rs-fMRI data

  neuroimaging-analysisrodentimage-processingsignal-processingindependent-component-analysis
  Language:MATLAB 9

• BrainDynamicsUSYD / BrainPalimpsest

  Matlab toolbox to deconvolve BOLD-fMRI data. It produces the underlying spatiotemporal neural and hemodynamic activity

  fmrineuroscienceneuroscience-methodsneuroimaging-analysis
  Language:MATLAB 7

• liu-yikang / SHERM-rodentSkullStrip

  Implementation of algorithm in 'Yikang Liu et al. (2020) Automatic Brain Extraction for Rodent MRI Images. Neuroinformatics. doi: 10.1007/s12021-020-09453-z''

  image-segmentationmedical-image-processingneuroimaging-analysisshape-descriptor
  Language:MATLAB 7

• miac-research / psmd

  Peak width of Skeletonized Mean Diffusivity (PSMD)

  neuroimagingneuroimaging-analysisdiffusion-mricerebral-small-vessel-diseaseresearch
  Language:Shell 7
• tfce

  ChristianGaser / tfce

  Threshold-free cluster enhancement toolbox for Matlab

  cluster-enhancementcortical-surfacesmri-brainmri-segmentationneuroimagingneuroimaging-analysisstatistical-analysistfcevoxel
  Language:MATLAB 4

• DynamicsAndNeuralSystems / humanStructureFunction

  Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP

  connectomicsneuroimaging-analysistime-series-analysis
  Language:MATLAB 4

• spisakt / PUMI

  Pypelines Utilizing a Modular Inventory

  neuroimagingneuroimaging-analysisnipypeporcupine
  Language:Python 4

• branelab / SimMEEG

  Software for simulating MEG and EEG event-related responses. functional connectivity, and phase-amplitude coupling

  megeegsimulationsneuroimaging-analysis
  Language:MATLAB 3

• dangom / fslx

  A simple and intuitive wrapper for FSL tools.

  neuroimagingneuroimaging-analysis
  Language:Shell 3

• neuroboros / neuroboros

  Neuroimaging analysis in Python

  brainfmrineuroimagingneuroimaging-analysisneurosciencepythonfmri-analysis
  Language:Python 3

• tommysprague / preproc_shFiles

  Prisma preprocessing (AFNI)

  neuroimagingneuroimaging-analysisafni
  Language:Shell 3

• iguanamarina / neuroSCC

  This package provides auxiliary functions for calculating Simultaneous Confidence Corridors (SCCs) on PET neuroimaging data. This package is developed as an auxiliary package to the project:

  functional-data-analysisneuroimaging-analysispositron-emission-tomography
  Language:R 2

• MRI-NOBEL / Perfusion-NOBEL

  Pre-clinical DSC-MRI perfusion map generator written in Python

  mrimri-brainneuroimagingneuroimaging-analysisneurosciencepythonpython-scriptpython3brain-perfusiondsc-mri
  Language:Python 2

• NeuroLife77 / pystorm

  Python implementation of various Brainstorm functions, often written for GPU or jit speed-up.

  neuroimaging-analysissignal-processingtime-series-analysis
  Language:Python 2

• raamana / niatlas

  Atlas methods and classes for neuroimaging

  neuroimagingatlasneurosciencenibabeltemplateneuroimaging-analysisnipynilearnparcellationroi-segmentationroi-analysisnilabels
  Language:Makefile 2

• scho97 / CompareModality

  Analysis of the EEG LEMON and MEG CamCAN datasets

  machine-learningneuroimaging-analysisneuroscience
  Language:Python 2

• adliska / roditore

  Collection of scripts for resting-state fMRI analysis

  fmrineuroimaging-analysisneuroimaging
  Language:Python 1

• bsl-tools / bsl-tools.github.io

  GitHub Pages for BSL.

  neuroscienceneuroimagingneuroimaging-analysislsleegreal-timedocumentation
  Language:HTML 1

• NatashaLTaylor / Brainstem_Attractor_Landscape

  Code repository for the paper - 'The structural and functional connectivity between distinct neuromodulatory systems underpins dynamic shifts in brain network topology and attractor landscape topography', Taylor et al. (2022)

  neuroimaging-analysis
  Language:MATLAB 1

• remolek / NFC

  This is a repository of MATLAB codes accompanying the paper "Non-linear functional co-activations: directed, dynamic, and delayed"

  neuroimaging-analysisneuroimagingfmrifmri-data-analysisfmri-analysisfunctional-connectivity
  Language:MATLAB 1

• scho97 / AnalyzeNTAD

  Analysis of the NTAD dataset

  machine-learningneuroimaging-analysisneuroscience
  Language:Python 1

• kedar-codes / hippo_morph

  Current code for my hippocampal morphometry workflow, based on the hippodeep_pytorch segmentation program and the SlicerSALT shape analysis software.

  3d-slicer-extensionbashfslhippocampusmorphometricsmorphometryneuroimagingneuroimaging-analysispythonshape-analysisspharm
  Language:Python 0

• kedar-codes / hippo_morph_old

  The old, outdated code for my hippocampal morphometry pipeline.

  3d-slicer-extensionbashhippocampusmorphometricsmorphometryneuroimagingneuroimaging-analysispythonshape-analysisspharm
  Language:Shell 0

• m-guseva / brain-area-localization-helper

  Creates a neat table of SPM results including brain areas for each coordinate extracted with mni2atlas toolbox

  matlabneuroimagingneuroimaging-analysis
  Language:MATLAB 0

• NPACore / awesome-neuroimaging

  Exploring, organizing, and analysing neuroimages (MR focus)

  awesomeawesome-listneuroimagingneuroimaging-analysis
  0

• pradhanhitesh / neuroimage-plugins

  Small plugins for some popular softwares to make neuroimaging analysis workflow easy

  bash-scriptcat12dtifslneuroimaging-analysisspm12vbm
  Language:Jupyter Notebook 0

• txusser / anapyze

  A set of tools for medical imaging processing and analysis that I have been crafting over the years.

  medical-image-processingneuroimaging-analysisnifti-format
  Language:Python 0

• CBICA / NiChart_Website

  The Landing page for the NiChart project

  image-processingmachine-learningneuroimagingneuroimaging-analysisvisualization
  Language:JavaScript

• juliam98 / Schizotypy-receptor-maps

  asl-mrineuroimaging-analysisreceptor
  Language:Python

• Omar-Saad-ELGharbawy / Investigating-Cognitive-Control-via-fMRI

  Explore the neural basis of cognitive control with this repository's in-depth analysis of the Flanker Dataset using fMRI. Using bash scripting to streamline preprocessing and ROI analysis, while incorporating R scripts to explore brain region activity during the task.

  bashbash-scriptfmrifslneuroimaging-analysisr-script
  Language:Shell

• thanhtbt / computer-aided-methods-for-Alzheimer-disease-detection

  A list of up-to-date papers on computer-aided methods for Alzheimer detection

  alzheimer-disease-predictiondeep-learningmachine-learningneuroimaging-analysistoolbox