brain-extraction

There are 1 repository under brain-extraction topic.

• vanandrew / brainextractor

  A re-implementation of FSL's Brain Extraction Tool in Python

  neuroscienceneuroimagingsegmentationpythonimage-processingbrain-extractionskull-strippingfsl
  Language:Python 32
• BrainMaGe

  CBICA / BrainMaGe

  Brain extraction in presence of abnormalities, using single and multiple MRI modalities

  pytorchpytorch-lightningpythonneuroimagingbrain-extractionnihdeep-learningmachine-learningskull-strippingsegmentation
  Language:Python 30

• WuChanada / StripSkullCT

  Extract brain and remove skulls from brain CT and CTA images

  skull-strippingctctabrain-extraction
  Language:MATLAB 25

• npnl / PALS

  Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs

  lesion-correctionwhite-matter-segmentationanatomical-mribrain-extractionfreesurfer
  Language:Python 21
• deepbet

  wwu-mmll / deepbet

  Fast brain extraction using neural networks

  brain-extractiondeep-learningneuroimagingpythonsegmentationskull-stripping
  Language:Python 20

• Macatools / macapype

  PNH segmentation pipelines based on nipype

  pythonnipypemri-segmentationprimateafniantsspm12fslmrimri-analysisbrain-extractionbrain-segmentationmesh
  Language:Python 19

• jlohmeier / atlasBREX

  atlasBREX: Automated averaged template-derived brain extraction in animal MRI

  mribrainextractionbrain-extractionskullstripbashantsfslregistrationscriptatlastemplate
  Language:Shell 15

• jcreinhold / pyrobex

  python bindings for ROBEX brain extraction

  brain-extractionmrineuroimagingt1
  Language:Python 4

• mu40 / fetal-align

  Rapid head‐pose detection for automated slice prescription of fetal‐brain MRI

  fetalmrineuroimagingbrain-extractioneye-detectionmserhead-poseepi
  Language:MATLAB 4

• andreped / neukit

  :hugs: neukit: web application for automatic brain extraction and preoperative tumor segmentation from MRI

  deep-learningdemohuggingfacemeningiomamripretrainedsegmentationspacest1web-appbrainbrain-extractiongliomametastasistumorhigh-gradelow-graderaidionics
  Language:Python 3

• gama-ufsc / brain-extraction-for-tumor-segmentation

  brain-extractionbratsdeep-learningmedical-imaging
  Language:Python 2

• neuronets / brainy

  Automated brain segmentation

  tensorflowbrainsegmentationmrineuroimagingtrained-modelsbrain-extraction
  Language:Python 2

• sjyothul / extracting-brain-boundaries-from-rs-fMRI-data

  we will extract the brain boundaries from the resting state functional magnetic resonance imaging (rs-fMRI) scans

  boundary-detectionbrain-extractiondata-miningimage-processingpythonrs-fmri
  Language:Python 2

• aghaeifar / bet2

  MATLAB mex interface and Python wrapper for standalone Brain Extraction Tool (bet2),

  bet2brain-extraction
  Language:C++ 1

• Computational-Imaging-LAB / MIPA-Stroke

  brain-extractionctctadeep-learningocclusionstrokestroke-prediction
  Language:Jupyter Notebook 1

• sjyothul / clustering-technique-to-detect-number-of-clusters-in-brain-slices-of-rs-fmri-scans

  we will apply clustering techniques to detect the number of clusters in the extracted brain slices of resting state functional magnetic resonance imaging (rs-fMRI) scans

  brain-extractionclustering-algorithmdata-miningimage-processingpythonrs-fmriunsupervised-learning
  Language:Python 1

• sjyothul / supervised-machine-learning-to-classify-the-IC-images-of-rs-fMRI-scans-as-RSN

  we will use supervised learning techniques to classify the independent component (IC) images of resting state functional magnetic resonance imaging (rs-fMRI) scans as Noise and Resting state network (RSN)

  binary-classificationbrain-extractiondata-miningimage-processingmodel-trainingpythonresting-staters-fmrisupervised-machine-learning
  Language:Python 1