mri-brain

There are 2 repositories under mri-brain topic.

templateflow / templateflow
The TemplateFlow Archive - A DataLad super-dataset
neuroimaging brain-imaging mri-brain
71
rmsouza01 / MC-MRI-Rec
deep-learning mri-reconstruction challenge mri-brain mri-data calgary-campinas-team
Language:Jupyter Notebook 51
Angeluz-07 / MRI-preprocessing-techniques
Code examples of the free course in Youtube of brain MRI preprocessing techniques in python
mri-brain python simpleitk
Language:Jupyter Notebook 39
dipterix / threeBrain
3D Visualization of Brain MRI
brain ieeg ecog r neuroimaging electroencephalography mri-brain template-brains localization
Language:R 39
ChristianGaser / cat12
Computational Anatomy Toolbox for SPM12
cortical-surfaces cortical-thickness gyrification mri-brain mri-brain-segmentation mri-segmentation neuroimaging statistical-analysis surface-reconstruction visualisation voxel-based-morphometry computational-neuroscience matlab surface-registration
Language:MATLAB 29
KUL-Radneuron / KUL_VBG
A workflow to allow Freesurfer recon-all to run on brain image with gliomas
mri-brain lesion-correction brain-parcellation clinical-research
Language:Shell 27
raun1 / MICCAI2018---Complementary_Segmentation_Network-Raw-Code
The following is a new architecture for robust segmentation. It may perform better than a U-Net :) for binary segmentation. I will update the code when I have some spare time within the next month. However you can simply read this one and will soon notice the pattern after a bit
miccai-2018 comp-net unet-image-segmentation complementary-segmentation-network mri-brain invariant-to-large-distortions state-of-art-general-segmentation
Language:Python 25
ahmedgh970 / Transformers_Unsupervised_Anomaly_Segmentation
Transformer-based Models for Unsupervised Anomaly Segmentation in Brain MR Images
deep-learning deep-neural-networks autoencoders latent-variable-models transformers unsupervised-deep-learning anomaly-detection-models flair mri-brain reconstruction anomaly-segmentation medical-imaging miccai2022 python brainles22-workshop
Language:Jupyter Notebook 19
tayebiarasteh / federated_he
Federated learning with homomorphic encryption enables multiple parties to securely co-train artificial intelligence models in pathology and radiology, reaching state-of-the-art performance with privacy guarantees.
federated-learning homomorphic-encryption differential-privacy segmentation medical-image-analysis medical-imaging deep-learning federated-learning-framework image-classification image-segmentation mri-brain mri-images mri-segmentation pysyft pytorch
Language:Python 17
BRAIN-TO / GIRFReco.jl
An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia
mri mri-brain mri-reconstruction
Language:Julia 15
elayden / MRIqual
A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI
matlab-toolbox quality tsnr mri convert-dicoms mri-brain mri-images fmri fmri-preprocessing fmri-data-analysis quality-assurance quality-control quality-metrics quality-check quality-measures fmri-data mri-data mri-signals
Language:MATLAB 12
dipterix / three-brain-js
Javascript engine for 3D brain model (used by RAVE project)
ecog freesurfer ieeg mri mri-brain mri-images neuroscience seeg webgl2 electrode-localization nifti-viewer
Language:JavaScript 11
Sourav-B98 / ALZHEIMERS-PREDICTION-CNN
This Machine Learning course project is on 3D MRI image analysis for Alzheimer's disease prediction. Transfer Learning is used for classification and analysis of images.
deep-learning python3 tensorflow2 keras-tensorflow cnn-classification mri-brain
Language:Jupyter Notebook 11
NIfTI-Studio
elayden / NIfTI-Studio
A toolbox for NIfTI and Analyze medical image visualization, editing, and 3D rendering
mri fmri fmri-data-analysis fmri-analysis fmri-image-slices mri-brain mri-images 3d-printing 3d-graphics toolbox matlab-toolbox image-visualization data-visualization
Language:MATLAB 10
FeliMe / brain_sas_baseline
Official implementation of the paper "Challenging Current Semi-Supervised Anomaly Segmentation Methods for Brain MRI" accepted to the MICCAI 2021 BrainLes workshop
anomaly-detection anomaly-segmentation mri-brain
Language:Python 10
Paint4Brains
SABS-R3-projects / Paint4Brains
A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.
mri mri-images mri-segmentation mri-applications mri-brain deep-neural-networks deeplearning brain brain-imaging segmentation segment gui convolutional-neural-networks u-net biomedical biomedical-image-processing paint paint-for-brains paint4brains mri-brain-segmentation
Language:Python 10
ejcanalesr / multicomponent-T2-toolbox
Non-parametric T2 relaxometry methods for myelin water quantification
myelin-water-fraction t2-relaxometry regularized-nnls multi-echo-t2 distribution myelin-water-imaging myelin non-negative-least-squares mri-brain relaxometry tikhonov-regularization
Language:Python 9
FinnBehrendt / Conditioned-Diffusion-Models-UAD
Codebase for Conditioned Diffusion Models for Unsupervised Anomaly Detection
anomaly-detection brats-dataset deep-learning diffusion-models domain-adaptation mri-brain unsupervised-anomaly-detection unsupervised-learning conditioned-diffusion-models
Language:Python 9
Open-Minds-Lab / mrQA
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
qa mri neuroimaging niqc brain ismrm mr-image mri-brain mri-images neuroscience quality-assurance quality-control
Language:Python 9
damianpolakpjwstk / alzheimer_disease_classification_tools
Tools for MRI classification of Alzheimer's disease using 3D CNN networks
3d-convolutional-network adni alzheimer-disease-prediction alzheimers-disease mri-brain mri-images
Language:Jupyter Notebook 7
AlexanderFrotscher / ANDi
Codebase for Unsupervised Anomaly Detection using Aggregated Normative Diffusion (ANDi)
anomaly-detection deep-learning diffusion-models mri-brain unsupervised-anomaly-detection unsupervised-learning
Language:Python 6
EmanuelAlogna / Brain-MRI-generation-using-GANs
Generation missing MRI using GANs - master thesis from Politechnic of Milan
generative-adversarial-network mri-brain mri-images deep-neural-networks deep-learning gan pix2pix-tensorflow
Language:Jupyter Notebook 6
NeuroSainteAnne / synthFLAIR
Synthetic FLAIR generation software
deep-learning tensorflow generative-model mri mri-brain
Language:Python 6
volBrain / DeeplesionBrain
medical-imaging neuroscience neuroimaging neuroanatomy brain-imaging deep-learning mri mri-segmentation multiple-sclerosis mri-brain nifti
6
tfce
ChristianGaser / tfce
Threshold-free cluster enhancement toolbox for Matlab
mri-brain mri-segmentation neuroimaging neuroimaging-analysis tfce voxel cortical-surfaces cluster-enhancement statistical-analysis
Language:MATLAB 5
TUDelftHao / 4DLongitudinal-MRI-Segmentation-Network
This is my Master thesis work at TU Delft, to longitudinally segment the MRI brain image series by 4D network.
u-net mri-segmentation mri-brain 4d-segmentation lstm-model
Language:Python 5
dumitrux / navigate-MRI-with-3Dmouse
It displays MRI in 2D and 3D multi-slice views, with easy search and navigation with a 3D mouse.
threejs ami mri mri-brain 3d-mouse nifti mri-image space-navigator webgl
Language:JavaScript 4
kaledhoshme123 / VAE-CycleGAN-MRI-CT-Scan-Images
The study works on generating CT images from MRI images, where unsupervised learning was used using VAE-CycleGan. Since the number of samples included in the data set used in the study, and therefore in this case we are in a state of epistemic uncertainty, therefore probabilistic models were used in forming the latent space.
cnn convolutional-neural-networks ct-images ct-reconstruction ct-scan-images cyclegan gan generative-adversarial-network image-generation image-to-image-translation keras mri-brain mri-images mri-reconstruction tensorflow variational-autoencoder
Language:Jupyter Notebook 4
MadheshRajS / MRI-reconstruction-using-Densely-Connected-Residual-DCR-block
Convolutional Neural Network(CNN) with Densely Connected Residual(DCR) block is built. U-Net with Densely Connected Residual(DCR) block is built. High quality reconstructed images with less noise and superior visual quality is produced
dataset deeplearning image-processing mri-brain mri-reconstruction
Language:Jupyter Notebook 4
Medical-Image-Analysis-Laboratory / FaBiAN
FaBiAN is the first Fetal Brain magnetic resonance Acquisition Numerical phantom that simulates realistic T2-weighted magnetic resonance images of the developing fetal brain throughout gestation. It is open source and supports reproducibility studies to improve fetal brain diagnosis.
mri mri-brain fetal-mri numerical-simulations
Language:MATLAB 4
ubmagh / KMeans_mri_MapReduce
Implementation of Kmeans algorithme on brain MRI, in a parallel manner with MapReduce
hdfs java kmeans-algorithm mapreduce mri-brain
Language:Java 4
Adl1coder / ImageProcessingExercises
image processing exercises with google colab
google-colab histogram histogram-equalization image-processing matplotlib opencv python3 brain brain-tumor-detection detection tumor kaggle mri mri-brain
Language:Jupyter Notebook 3
gsroberts1 / QVT
Forked to 'github.com/uwmri/QVT'
mri-brain mri-data pulsatile-flow segmentation-automation vascular-flow 4d-flow pcvipr
Language:MATLAB 3
high-dimensional / biobank-megamodeller
This is a repository hosting all code and models detailed in the article Computational limits to the legibility of the human brain.
brain-imaging convolutional-neural-networks deep-learning feedforward-neural-network high-dimensional-data mri mri-brain
Language:HTML 3
jc-cp / mri_preprocessing
This repository aims to present a general, customazible pipeline for MRI images based on a single configuration file (in .json format) that has different flags and according to them, a certain pre-processing procedure with desired steps is performed.
ai medical-ai medical-image-processing mri-brain mri-images
Language:Python 3
MaastrichtU-CDS / federated-brain-age
Federated implementation of a CNN to predict brain age from MRI-derived gray matter
biomarkers brainage cnn deep-learning federated federated-learning mri-brain vantage6
Language:Python 3

mri-brain

templateflow / templateflow

rmsouza01 / MC-MRI-Rec

Angeluz-07 / MRI-preprocessing-techniques

dipterix / threeBrain

ChristianGaser / cat12

KUL-Radneuron / KUL_VBG

raun1 / MICCAI2018---Complementary_Segmentation_Network-Raw-Code

ahmedgh970 / Transformers_Unsupervised_Anomaly_Segmentation

tayebiarasteh / federated_he

BRAIN-TO / GIRFReco.jl

elayden / MRIqual

dipterix / three-brain-js

Sourav-B98 / ALZHEIMERS-PREDICTION-CNN

elayden / NIfTI-Studio

FeliMe / brain_sas_baseline

SABS-R3-projects / Paint4Brains

ejcanalesr / multicomponent-T2-toolbox

FinnBehrendt / Conditioned-Diffusion-Models-UAD

Open-Minds-Lab / mrQA

damianpolakpjwstk / alzheimer_disease_classification_tools

AlexanderFrotscher / ANDi

EmanuelAlogna / Brain-MRI-generation-using-GANs

NeuroSainteAnne / synthFLAIR

volBrain / DeeplesionBrain

ChristianGaser / tfce

TUDelftHao / 4DLongitudinal-MRI-Segmentation-Network

dumitrux / navigate-MRI-with-3Dmouse

kaledhoshme123 / VAE-CycleGAN-MRI-CT-Scan-Images

MadheshRajS / MRI-reconstruction-using-Densely-Connected-Residual-DCR-block

Medical-Image-Analysis-Laboratory / FaBiAN

ubmagh / KMeans_mri_MapReduce

Adl1coder / ImageProcessingExercises

gsroberts1 / QVT

high-dimensional / biobank-megamodeller

jc-cp / mri_preprocessing

MaastrichtU-CDS / federated-brain-age