vivekbhr

Subread_to_DEXSeq

Scripts to import your FeatureCounts output into DEXSeq

reproChecklist

#eLifeAmbassadors reviewer's checklist for assessing reproducibility of computational methods in life science publications

cage_pipeline

Pipeline for CAGE data analysis using icetea

doctorRbite

An updated R Markdown thesis template using the bookdown package, for University of Freiburg

icetea

R/Bioconductor package for analysis of single and paired-end capped-RNAseq data (CAGE/RAMPAGE/MAPCap)

dhx-alu

Scripts related to DHX-Alu project

scRiboQuant

single-cell ribosomal profiling analysis workflow

academic_hugo

atom

:atom: The hackable text editor

bigspring-hugo-startup-theme

cicero-release

deepTools

Tools to process and analyze deep sequencing data.

ecosystem-packages

Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)

GamestonkTerminal

The next best thing after Bloomberg Terminal

hugo-apsho

images-metaresearch

shiny app for imaging meta-research

kallisto

Near-optimal RNA-Seq quantification

loompy

Python implementation of the Loom file format - http://loompy.org

MethylDackel

A (mostly) universal methylation extractor for BS-seq experiments.

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

myScripts

A bunch of non-generic scripts that I use in my projects

phd_thesis_markdown

Template for writing a PhD thesis in Markdown

phdThesis

My PhD Thesis, using Rmd and LATEX

rangeR

complex operations with GRanges

scRIApipe

single-cell RNA Isoform Analysis Pipeline

shinychecklist

Easily create interactive checklists with shiny

snakepipes

Snakemake workflows and wrappers for NGS data processing

snakepit

Collection of snakemake workflows

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks