Patrick Dolan's repositories
CirQuestDSV
Annotation and Analysis of Deep Sequencing Variants from CirSeq
RNAseq_pipe
RNAseq pipeline examples
haploclique
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
Xiaoetal_2017_analysis
Analysis for Nat. Comm. Xiao, Dolan et al.
ahasverus
Investigations in Aging
pymolMappeR
Collection of scripts for mapping values from R onto pdb files as b-factor. Requires `Rpdb` and `bio3d` packages.
Pyrite
Python utilities
anno
Anno is a variant annotation tool
BASR
Pipeline for Ancestral State Reconstruction
bio3d_nma
Scripts for normal mode analysis (pkg: bio3d) and downstream plotting in R
doggo
Test resampling for enrichment statistics.
dotsplot
Quick script for generating dot plots from bio sequence data
feeling-responsive
»Feeling Responsive« is a free flexible theme for Jekyll built on Foundation framework. You can use it for your company site, as a portfolio or as a blog.
mNSC-Analysis_Vonk-et-al
RNAseq analysis of RNAseq data from differentiating murine NSCs
PhyloTorials
Nascent step-by-step phylogenetics instructions and tutorials.
poreplex
A versatile sequenced read processor for nanopore direct RNA sequencing
QVEU
QVEU webpage
sarscov2
Collection of data and scripts for Andino lab efforts in coronavirus
STEVE
Search Tools for EVEs: EVE search, annotation and comparison tools.