sciworkflows

There are 0 repository under sciworkflows topic.

common-workflow-language
common-workflow-language / common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
cwl common-workflow-language containers workflows science workflow commonwl sciworkflows
Language:Common Workflow Language 1443
cwltool
common-workflow-language / cwltool
Common Workflow Language reference implementation
common-workflow-language cwl workflows containers science commonwl sciworkflows
Language:Python 322
snakemake-workflows / rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
snakemake sciworkflows reproducibility gene-expression-analysis deseq2
Language:Python 311
snakemake-workflows / dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
gatk genomic-variant-calling reproducibility sciworkflows snakemake
Language:Python 234
snakemake-workflows / dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
genomic-variant-calling reproducibility sciworkflows snakemake varlociraptor
Language:Python 81
snakemake-workflows / rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
differential-expression kallisto reproducibility rna-seq sciworkflows sleuth snakemake
Language:Python 63
akcorut / kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
snakemake genomics gwas gwas-pipeline kmers bioinformatics-pipeline ngs sciworkflows bioinformatics conda pipeline association-mapping bioinformatics-tool gwas-tools structural-variation workflow
Language:Python 25
nikostr / dna-seq-deepvariant-glnexus-variant-calling
A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.
genomic-variant-calling deepvariant sciworkflows snakemake reproducibility
Language:Python 4
tomarovsky / BuscoClade
Snakemake pipeline to construct species phylogenies using BUSCOs
busco phylogenomics sciworkflows snakemake
Language:Python 4
kinow / wrf-sandbox
cylc workflow scheduler weather-model climate-model python wrf sciworkflows