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Weng Lab (weng-lab)

Weng Lab

weng-lab

Geek Repo

Zhiping Weng's lab at UMASS Medical School

Location:Worcester, MA, USA

Home Page:https://www.umassmed.edu/zlab/

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Weng Lab's repositories

TEMP2

Algorithm to detect germline and de novo transposon insertions

Language:ShellLicense:GPL-3.0Stargazers:25Issues:6Issues:27

ENCODE-cCREs

Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements

Language:ShellStargazers:19Issues:6Issues:9

BENGI

Language:PythonStargazers:17Issues:13Issues:3

logojs-package

Javascript package for embedding sequence logos

Language:JavaScriptLicense:MITStargazers:14Issues:4Issues:3

ATLAS

Altered TCR Ligand Affinities and Structures

Language:HTMLLicense:GPL-3.0Stargazers:10Issues:24Issues:9

bigwig-reader

Typescript library for reading BigWig and BigBed files.

Language:TypeScriptLicense:MITStargazers:9Issues:18Issues:5

libzdock

ZDOCK predictions and PDB structures in C++ and Python

Language:C++License:BSD-2-ClauseStargazers:8Issues:19Issues:1

SCREEN

Language:JavaScriptLicense:MITStargazers:8Issues:9Issues:73

cluster-buster

Language:C++Stargazers:6Issues:5Issues:5

atacseq-workflow

The ENCODE DCC ATAC-seq pipeline, adapted for Krews

Language:PythonStargazers:3Issues:18Issues:0

krews

KREWS Scientific Data Pipeline Framework

Language:KotlinStargazers:3Issues:18Issues:0

cabbagelooper

Cabbage looper

Language:CSSLicense:BSD-3-ClauseStargazers:2Issues:23Issues:0

logojs-webapp

React App with components for rendering protein, DNA, and RNA sequence logos

Language:JavaScriptLicense:MITStargazers:2Issues:4Issues:0

signal-service

Service for signal and peak data

Language:TypeScriptLicense:MITStargazers:2Issues:10Issues:0

psychscreen

PsychSCREEN

Language:TypeScriptLicense:MITStargazers:1Issues:5Issues:0

RAMPAGE-Analysis

Language:ShellLicense:MITStargazers:1Issues:14Issues:0

SCREEN2.0

Dev Deployment

Language:TypeScriptLicense:MITStargazers:1Issues:7Issues:31

chrombpnet

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

Language:Jupyter NotebookLicense:MITStargazers:0Issues:1Issues:0

ldr

Dockerized LD regression

Language:PythonLicense:GPL-3.0Stargazers:0Issues:5Issues:0

motif-workflow

Language:KotlinStargazers:0Issues:9Issues:2

api-gateways

API Gateway for Genome Almanac services.

Language:TypeScriptStargazers:0Issues:10Issues:0

bigwig-reader-gcp

Language:TypeScriptLicense:MITStargazers:0Issues:12Issues:0

chrombpnet-workflow

Krews workflow for running ChromBPNet

Language:PythonLicense:MITStargazers:0Issues:10Issues:0

dictys

Language:PythonLicense:AGPL-3.0Stargazers:0Issues:6Issues:0

docker-nss

libnss plugin for Docker

Language:CStargazers:0Issues:22Issues:0

factorbook-meme

Language:KotlinStargazers:0Issues:2Issues:0

nshedd

Nicole's code and stuff

Language:PythonStargazers:0Issues:6Issues:0

weng-lab.github.io

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ZMotif

CNN-based motif discovery algorithm

Language:Jupyter NotebookLicense:MITStargazers:0Issues:7Issues:1

Zoonomia

Language:PythonLicense:MITStargazers:0Issues:9Issues:1