cellranger

There are 0 repository under cellranger topic.

nf-core / scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
nf-core nextflow workflow pipeline 10x-genomics 10xgenomics alevin bustools cellranger kallisto rna-seq single-cell star-solo
Language:Nextflow 171
mehdiborji / nanoranger
simplified cellranger for long-read data
cellranger minimap2 mixcr nanoranger sc-rna-seq single-cell-rna-seq spatial-transcriptomics tcr-repertoire tcr-seq vdj-recombination 10x-genomics pacbio slide-seq bioinformatics bioinformatics-pipeline computational-genomics computational-science linux python3
Language:Python 13
qbic-pipelines / cellranger
Nextflow pipeline wrapper for executing Cell Ranger
pipeline cellranger nextflow docker
Language:Nextflow 12
tstephie / UMICH-CDS-SR-scRNA-seq-Workshop-2022
scRNA-seq analysis 2022 workshop hosted by UMICH's CDS-SR
r workshop seurat cellranger
Language:HTML 5
hisplan / wdl-cellranger-gex
WDLized Cell Ranger GEX
cellranger wdl single-cell pipeline gene-expression workflow
Language:WDL 1
IMS-Bio2Core-Facility / polya_liftover
A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger
bioinformatics-pipeline snakemake cellranger liftover workflow single-cell-rna-seq reproducibility python shell transcriptomics fastqc multiqc
Language:Python 1
OOAAHH / SRA_Analysis_WDL
用于bioos的大规模数据分析
atac-seq bioinformatics bioinformatics-workflows cellranger computational-biology cromwell next-generation-sequencing python scrna-seq spatial-analysis wdl-workflows workflow bioos
Language:WDL 1
raveancic / scRNAaltas_TNBC_mm
scrna-seq-analysis snakemake snakemake-pipeline cellranger singularity scrna pbs
Language:Python 1
rnacentre / WDL_dev_10X_DropSeq_SeqWell_BD
WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @SunHao(OOAAHH)
atac-seq bioinformatics cellranger cromwell python scrna-seq spatial-analysis wdl-workflow workflow starsolo
Language:WDL 1
mostafa-ti / Master_thesis_bioinformatics
Repository of the master project in Bioinformatics at Lund University
single-cell-rna-sequencing velocity-analysis cellranger scanpy scvelo 10xgenomics velocyto
Language:Jupyter Notebook 0
adityamahadevaniyer / scRNA-seq-analysis
Basic scRNA-seq analysis in Seurat using GBM data
cell-annotation cellranger qc scrna-seq seurat
hisplan / wdl-cellranger-cellplex
WDLized Cell Ranger Cell Plex
wdl cellranger cellplex workflow pipeline single-cell
Language:WDL
hisplan / wdl-cellranger-vdj
WDLized Cell Ranger V(D)J
cellranger pipeline single-cell wdl workflow
Language:wdl
Kur1sutaru / wrapper_factory
bioinformatics cellqc cellranger python r seurat-objects single-cell
Language:Shell
manuelphilip / Single-cell-analysis-Snakemake-workflow
A Snakemake workflow for analysing single cell data obtained from Cell ranger platform using Seurat package
cellranger seurat single-cell
Language:Python
Matthew-Mosior / Cell-Ranger-Setup
A Haskell script that takes in a configuration YAML to create and launch Cell Ranger count and/or vdj runs via LSF bsub commands accordingly.
lsf bsub bwait cellranger system-call yaml-configuration
Language:Haskell
pmb59 / cellranger-vdj
V(D)J T Cell and B Cell Analysis with cellranger vdj
cellranger single-cell vdj multi
Language:Shell
TomKellyGenetics / cellranger_clean
10x Cell Ranger Docker Image
docker cellranger single-cell scrna scrna-seq genomics umi
Language:Shell