htseq-count

There are 0 repository under htseq-count topic.

hanielcedraz / BAQCOM
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
trimmomatic star quality-control rna-seq-analysis rna-seq-pipeline mapping rnaseqpipeline rna-seq-mapping rna-seq-qc bioinformatics bioinformatics-pipeline rna-seq-aligner multiqc fastqc hisat2 htseq-count featurecounts
Language:R 8
datasnakes / htseq-count-cluster
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
htseq htseq-count-cluster cluster sge htseq-count rnaseq cli
Language:Python 4
wucc009 / Platelet_transcriptome_fastq_data_processing
血小板转录组fastq数据处理
geo ena sra linux aria2c bwa ensemble fastp fastqc htseq-count r rpm star tpm trimmomatic circbank ciri2 fastq
Language:Shell 2
bixBeta / xcode.beta
SLURM job temps @UALBANY
star alignment bioinformatics-scripts bioinformatics htseq htseq-count ualbany slurm sbatch
Language:Shell 1
Manninm / MiKTMCSnakemakePipeline
Attempt at snakemake pipeline. Pyflow was forked from https://github.com/crazyhottom but the Snakefile infrastructure and rule calling was inspired by https://github.com/snakemake-workflows
htseq-count snakemake fastqs star pipeline ballgown stringtie slurm-cluster
Language:R 1
Pinky-cloud224 / snakemake_workflow_rna_seq_data_analysis
conda config cutadapt fastq-files fastqc featurecounts htseq-count jupyter-notebook kallisto multiqc paired-end python3 rna-seq salmon snakemake-workflow tpm
Language:Jupyter Notebook 1
gih0004 / RNA_seq_pipeline
RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2
htseq htseq-count rna-seq rna-seq-analysis rna-seq-pipeline
Language:Shell 0
Fatemehrshd / RNA-Seq-Analysis
bioinformatics fastqc hisat htseq htseq-count r read-mapping rna-sequencing samtools trimmomatic
Language:Jupyter Notebook
mattgalbraith / htseq2-docker-singularity
Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity
apptainer bioinformatics docker genomics htseq htseq-count sequencing singularity
Language:Dockerfile