cutadapt

There are 0 repository under cutadapt topic.

• digo4 / Clinical-Genomics

  Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

  bcftoolsbowtie2bwa-memcutadaptfastpfastqcfreebayesgatk-bestpracticesgatk-cnvgatk-joint-variant-calling-workflowgatk4gatk4-haplotypecallerpicardsamtoolstrimgaloretrimmomaticvarscan
  Language:Shell 36
• cutseq

  y9c / cutseq

  ✂️ Trim sequencing adapters from NGS data automatically

  adapterbarcodebioinformaticscutadaptdna-seqngsrna-sequmi
  Language:Python 4

• Pinky-cloud224 / snakemake_workflow_rna_seq_data_analysis

  condaconfigcutadaptfastq-filesfastqcfeaturecountshtseq-countjupyter-notebookkallistomultiqcpaired-endpython3rna-seqsalmonsnakemake-workflowtpm
  Language:Jupyter Notebook 1

• DavideScarpetta / taxonomic_profiling

  Metabarcoding analysis pipeline, using DADA2 and qiime2

  bioinformaticsbioinformatics-pipelinecutadaptdada2metabarcodingmetabarcoding-dataqiime2taxonomic-profiling
  Language:Shell 0

• GenomicaMicrob / pair-end_cleaner

  Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).

  16scutadaptfastq-filesilluminametagenomicspair-end
  0

• cyverseuk / cutadapt

  bioinformaticsdockerfileagaveapicyverseukcutadapthpchpc-applications
  Language:Shell

• hisplan / docker-cutadapt

  Dockerized cutadapt

  dockercutadapt
  Language:Shell

• subhakanta0606 / NGS-pipeline

  This repository contains the code pipeline I developed for Next Generation Sequencing (NGS) analysis during my internship at CSIR-IGIB, New Delhi. The project was completed under the guidance of Mr. Sunil Nagpal and Dr. Bhupesh Taneja. For detailed instructions and a better understanding of pipeline, please refer to the README.md file.

  cutadaptfasterq-dumpfastqcpearprinseq-literdpshell-scriptsra-toolkit
  Language:Shell