reproducible-workflows

There are 2 repositories under reproducible-workflows topic.

• gpoore / codebraid

  Live code in Pandoc Markdown

  reproducible-researchreproducible-workflowsreproducible-analysismarkdownpandoc-markdownpandoc-filterliterate-programmingjulia-languagepythonrustrust-langr-languagebashjavascript
  Language:Python 361
• awesome-reproducible-research

  leipzig / awesome-reproducible-research

  A curated list of reproducible research case studies, projects, tutorials, and media

  awesomeawesome-listreproducibilityreproducible-analysisreproducible-researchreproducible-sciencereproducible-workflows
  Language:Python 294

• reanahub / reana

  REANA: Reusable research data analysis platform

  research-datareproducible-researchreproducible-workflowskubernetescontainerscwlreusable-science
  Language:Python 120

• centre-for-humanities-computing / DaCy

  DaCy: The State of the Art Danish NLP pipeline using SpaCy

  spacyreproducible-workflowsdanish-languagenatural-language-processing
  Language:Python 88

• a-paxton / living-documents

  How to use Jupyter notebooks and R markdown to create living documents and reproducible reports.

  tutorialworkshop-materialsrr-markdownjupyter-notebookjupyterreproducible-workflowsliving-documents
  Language:Jupyter Notebook 49

• ctuning / ctuning-programs

  Collective Knowledge extension with unified and customizable benchmarks (with extensible JSON meta information) to be easily integrated with customizable and portable Collective Knowledge workflows. You can easily compile and run these benchmarks using different compilers, environments, hardware and OS (Linux, MacOS, Windows, Android). More info:

  open-benchmarkscommon-benchmarkscustomizable-benchmarkingcollaborative-benchmarkingcollaborative-optimizationjson-metadatajson-apicollective-knowledgereproducible-researchreproducible-workflowsccppfortranopenclcudacrowd-benchmarkingcrowd-tuning
  Language:C 49

• calekochenour / remote-sensing-textbook

  Textbook that provides JavaScript and Python code to create open reproducible remote sensing analyses and workflows in Google Earth Engine.

  google-earth-enginejavascriptjupyter-notebookspythonremote-sensingreproducible-sciencereproducible-workflowsscientific-computingtextbook
  Language:HTML 36

• ziap / dotfiles

  My SwayWM dotfiles

  linuxconfigdesktop-environmentdotfilesneovimricericingrofiswaywmwaylandzshreproducible-workflowsworkflownvimshell-promptvimvimrc
  Language:Lua 33

• OpenScienceMOOC / Module-3-Reproducible-Research-and-Data-Analysis

  Module 3: Reproducible Research and Data Analysis

  open-sciencedata-analysisdatabasereproducible-researchreproducible-sciencereproducible-workflows
  Language:HTML 10

• enoches / Qualis_2019_preliminar

  Revistas de Economia com a nova classificação Qualis 2019: lista extraída a partir daquele PDF de quatrocentas páginas!

  rrstatspt-brplanilhareprodutivelreproducible-workflowsdata-wranglingdadoseconomia
  Language:HTML 5

• gederajeg / happyr

  The accompanying R package for Rajeg's (2019) PhD thesis titled "Metaphorical profiles and near-synonyms: A corpus-based study of Indonesian words for Happiness"

  conceptual-metaphorscorpus-linguisticsmetaphorical-pattern-analysismetanetframe-semanticscognitive-linguisticsindonesianemotion-metaphorshappiness-metaphorsnear-synonymsconstruction-grammartype-per-token-ratiodistinctive-collexeme-analysiscollocational-analysisopen-sciencereproducibilityreproducible-workflowstidyverse
  Language:R 4

• guilgautier / reproducible-phd

  Get your Ph.D. reproducible with Python and Github

  githubpythonreproducible-researchreproducible-workflows
  Language:TeX 4

• gustaveroussy / rna-count-kallisto

  Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

  snakemake-workflowsnakemakebioinformaticsreproducible-workflowskallistofastqcmultiqccondajson-schema
  Language:Python 3

• gisma-courses / LV-uav-workflow

  The Micro Remote Sensing course - provides a complete introduction to reproducible flight planning, acquisition, pre-processing, and exemplar analysis of high resolution low budget image data using commercial and open software systems.

  djiflightplanlitchimicro-remote-sensingmissionplanner2djiopendronemappixhawkqgroundcontrolremoteremote-sensingreproducible-researchreproducible-workflowsuav
  Language:Ruby 2

• holmesjoli / archiveR

  An R package for data archiving and linking with code

  rgitreproducibilityreproducible-researchreproducible-analysisreproducible-workflowsarchive
  Language:R 2

• ivotron / mlperf-workflows

  Popperized MLPerf benchmark workflows

  reproducible-workflowsbenchmarksmlperfpopper
  Language:Python 2

• pbizopoulos / a-makefile-for-developing-containerized-latex-technical-documents

  arxivreproducible-workflowsreproducible-buildsreproducible-sciencepaperreproducible-researchdockermakefilelatex
  Language:TeX 2

• adaish / reprod

  my R environment

  rrstatsreproducible-workflows
  1

• holmesjoli / utilsR

  R utility functions

  rreproducible-researchreproducibilityreproducible-analysisreproducible-workflows
  Language:R 1

• tdayris-perso / bam-msisensor

  Detect replication slippage variants at microsatellite regions

  bioinformatics-pipelinesnakemake-workflowsreproducible-workflowsmicrosatellite-instability
  Language:Python 1

• tdayris-perso / rna-count-salmon

  Snakemake workflow for Salmon quantification and FastQC quality controls

  snakemake-workflowsbioinformatics-pipelinereproducible-workflowsrnaseq-pipelinefastqcsalmonmultiqc
  Language:Python 1

• w-guo / Rental-price-prediction-pipeline

  Build a re-usable end-to-end pipeline for predicting short-term rental prices in NYC

  reproducible-workflowswandbhydra
  Language:Python 1

• holmesjoli / archivePy

  A Python package for data archiving and linking with code

  pythongitpython3reproducibilityreproducible-researchreproducible-analysisreproducible-workflowsarchive
  Language:Python 0

• smarthome-go / server-integration-docker

  A docker image for running the server's integration tests in a reproducible manner

  ci-cdconcourse-cidockerdocker-containerintegration-testingreproducible-workflows
  Language:Shell 0

• calekochenour / machine-learning-tutorial

  Tutorial for working with machine learning algorithms in Python.

  bindermachine-learningpythonreproducible-workflowstutorial
  Language:Python

• gustaveroussy / rna-count-salmon

  Count your fastq-formatted rna-seq reads with Salmon

  bioinformatics-pipelinesalmonfastqcmultiqcsnakemake-workflowcondareproducible-workflows
  Language:Python

• holmesjoli / ProgrammerKnowledgeBase

  A bookdown project of best programmer practices for intermediate R and Python programmers

  rpythongitreproducible-researchreproducibilityreproducible-analysisreproducible-workflowsefficiencybest-practices
  Language:HTML

• holmesjoli / utilsPy

  Python utility functions

  pythonpython-3reproducibilityreproducible-researchreproducible-analysisreproducible-workflows
  Language:Python

• mxagar / udacity-cd0581-building-a-reproducible-model-workflow-exercises

  Exercise Staters and solutions for cd0581-building-a-reproducible-model-workflow by Giacomo Vianello

  machine-learningmlflowreproducible-workflowsmlops
  Language:Jupyter Notebook

• tdayris / fair_gatk_mutect2

  Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2

  fairgatk-bestpracticesmutect2reproducible-workflowssnakemakesnakemake-workflowvariant-calling
  Language:Python