singularity-container

There are 3 repositories under singularity-container topic.

• apptainer / singularity

  Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.

  containerscontainersingularity-containerportablelinuxhpcparallelsingularitysciencereproduciblereproducible-scienceportabilityrootless-containerscloud-native
  Language:Go 2590

• apptainer / apptainer

  Apptainer: Application containers for Linux

  linuxcontainerssciencehpcapptainersingularitysingularity-containerrootless-containers
  Language:Go 1620

• ReproNim / neurodocker

  Generate custom Docker and Singularity images, and minimize existing containers

  neurosciencedockernipypereproducible-researchsingularity-containersciencecontainerslinuxdockerfileapptainer
  Language:Python 351

• kaczmarj / apptainer-in-docker

  Apptainer in Docker!

  apptainercontainersdockerhpcsingularitysingularity-container
  Language:Dockerfile 53
• MACSE_V2_PIPELINES

  ranwez / MACSE_V2_PIPELINES

  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

  bioinformatics-pipelinebarcodingsequence-alignmentsequence-alignmentssingularity-containernextflow
  Language:Shell 35

• hpcng / nomad-driver-singularity

  HashiCorp Nomad driver plugin - Singularity

  nomadsingularity-containerrootless-containershtchpcplugin
  Language:Go 27

• ehw-fit / tf-approximate

  Approximate layers - TensorFlow extension

  tensorflowapproximate-computingmultiplierspythonsingularity-containerdocker-containertensorflow-libraryconvolution
  Language:C 26

• singularityhub / singularity2docker

  convert a singularity image back to Docker, full circle! #containerfriends

  singularitysingularity-containerdockerconverter
  Language:Shell 25

• pydicom / dicom-containers

  singularity and Docker containers to easily get started with common dicom tools

  singularitysingularity-containerdcm2kdicomdockercontainerpynetdicompydicom
  Language:Dockerfile 23

• E4S-Project / e4s-cl

  Container manager for E4S

  apptainercontainerse4smpipodmanshiftersingularity-container
  Language:Python 19

• GaneshShivalingappa / Parametric-NN-Models

  Physics-Informed Neural Network, Finite Element Method enhanced neural network, and FEM data-based neural network

  continuum-mechanicsdeep-learningdockerdockerfilesfenicsfinite-element-methodsphysics-informed-neural-networkspythonpytorchsingularitysingularity-containersurrogate-models
  Language:Python 18

• manuparra / singularitycontainers-on-m1-arm64

  This is a repository containing a ready-to-use environment for singularity in arm64 (Apple M1).

  m1-macsingularity-containerska-telescope
  Language:Python 18

• Serka-M / mmlong2-lite

  Lightweight bioinformatics pipeline for microbial genome recovery

  bioinformaticslong-read-sequencingmetagenome-assembled-genomesmetagenomicsmicrobial-genomicsmicrobiomenanoporepacbiosingularity-containersnakemake-workflow
  Language:Python 17

• dtrudg / clair-singularity

  Scan Singularity container images using a Clair server

  clairsingularity-containersecurity-audit
  Language:Python 16

• singularityhub / sregistry-cli

  Singularity Global Client for container management

  singularity-containersingularitysingularity-hubsingularity-registryclient
  Language:Python 15

• haavee / jiveplot

  Python based plotting package for CASA MeasurementSet

  plotpythonvisualizationpgplotcasa-measurementsetsingularity-containersingularity-image
  Language:Python 13

• maxemil / PhyloMagnet

  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics

  metagenomicsnext-generation-sequencingphylogeneticsnextflowsingularity-containerevolution
  Language:Nextflow 11
• singularity-catalog

  singularityhub / singularity-catalog

  The Singularity Community Catalog of Singularity* recipe files.

  singularitysingularity-containersingularity-catalogsingularity-recipe
  Language:Singularity 11

• ArangoGutierrez / Singularity-on-Nomad

  The Singularity on Nomad tutorial documents how to deploy Singularity on Nomad.

  singularity-containercontainerstutorialhashicorpnomadconsul
  Language:Shell 10

• singularityhub / singularity-ci

  example builders for Singularity images using continuous integration

  singularitysingularity-containerbuildercontinuous-integrationci
  9

• alan-turing-institute / AI-workflows

  A collections of portable, real-world AI workflows for testing and benchmarking

  hut23hut23-947singularitysingularity-containerhpcaimachine-learningapptainer
  Language:Shell 8

• NYU-Molecular-Pathology / LG-PACT

  NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.

  docker-containergroovyhtmlmakefilemarkdownnextflowpythonsingularity-containerslurm
  Language:Nextflow 8
• Syndeo

  mit-ll / Syndeo

  Syndeo allow users to run massively parallel jobs using Ray on SLURM using secure containerization with Apptainer.

  apptainercontainersorchestrationraysingularity-containerslurm
  Language:Shell 7

• supercontainers / isc-tutorial

  ISC 2023 -- Getting Started with Containers on HPC

  containersdockerhpcshiftersingularitysingularity-containersupercomputertutorial
  Language:C++ 7

• bencardoen / singularity_slurm_cuda

  Example on how to get started with Singularity and CUDA on a SLURM cluster

  singularity-containercudatensorflownvidiaslurm-cluster
  Language:Shell 6

• felixdittrich92 / Document_Scanner

  this repository contains utils for post processing scanned documents and classify any kind of document for the given labels

  deep-learningmachine-learningdocumentstransformercnnautoencoderdocument-scannerdenoising-imagessingularity-containerclassify-documents
  Language:Python 6

• bencardoen / SPECHT.jl

  SPECHT is a Julia implementation of a contrastive weakly supervised object detection and identification method for fluorescence microscopy.

  belief-theorycontrastive-learningmicroscopy-imagesobject-detectionsingularity-containersted-microscopyweakly-supervised-detection
  Language:Julia 5

• bids-apps / ndmg

  BIDS app for NeuroData's MRI to Graphs pipeline

  diffusion-mriconnectomicsdocker-containersingularity-containerbidsbidsapp
  Language:Dockerfile 5

• mmore500 / mwe-singularity-checkpoint

  A minimal working example of DMTCP checkpoint-restart inside a Singularity container.

  singularity-containerdmtcpscientific-computingcheckpoint-restart
  Language:Shell 5

• ncar-xdev / repo2apptainer

  Repo2apptainer: Wrapper around repo2docker producing Jupyter enabled Apptainer/Singularity images.

  apptainerhpc-applicationsjupytersingularitysingularity-container
  Language:Python 5

• singularityhub / singularity.lang

  xml syntax file for formatting Singularity recipes in gedit

  singularity-containersingularitysyntax-highlightinggeditubuntu
  Language:Vim Script 5

• GiancarloPaoletti / PBS_qsub_gridsearch

  Simple bash script to launch gridsearch qsub jobs on PBS

  horovodhpchpc-clusterhpc-clustersmpisingularitysingularity-container
  Language:Shell 4

• roboticsleeds / isaac-orbit-container

  Singularity container for Isaac Sim and Isaac Orbit with ROS Noetic.

  containersisaac-simrossingularity-container
  Language:Shell 4

• singularityhub / paraview-visualizer

  Singularity container recipes to run the paraview visualizer

  paraviewvisualizersingularitysingularity-container
  4

• vsoch / singularity-nginx

  web application to serve (simple) singularity images

  singularitysingularity-containersnginxsingularity-container
  Language:Python 4

• leosfan / fastq2dcc

  Install the GeoMxNGSPipeline_Linux_2.0.0.16 tool from Nanostring/illumina to docker container, and convert it to Singularity.

  digital-pathologydspgeomxnanostringsingularity-container
  3