msberends

AMR

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

clean

Fast and Easy Data Cleaning (in R)

cleaner

Fast and Easy Data Cleaning (in R)

a_new_instrument_for_microbial_epidemiology

This is my full PhD thesis in R Markdown (using the bookdown package), containing a PDF and EPUB file, and a website in the ‘docs’ folder with the integral content of the book. The shortened URL is git.io/PhDthesisAMR.

microorganisms

An R package containing data sets with up to date microbial taxonomy

radar

An interactive tool for rapid analysis of diagnostic and antimicrobial pattern in R using Shiny

sf

Simple Features for R

ahon

AMR_data_analysis_with_R

Source code of the book: "Antimicrobial Resistance Data Analysis With R"

auto-r-pkg-version

bartlett_et_al_2022_human_pathogens

caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

certe-medical-epidemiology

Source universe for: certe-medical-epidemiology

eucic2023

gallery

Gallery of ggplot2 extensions

hashing

Simple Shiny app to encrypt data for safe, anonymised data transfer

mariana

A thTheme and RStudio theme from Sublime Text 3

Microsoft365R

R SDK for interacting with Microsoft 365 APIs

msberends.r-universe.dev

OpenCore-Legacy-Patcher

Experience macOS just like before

PhD_student_info

This is a simple repo with info for my (new) PhD students.

pillar

Format columns with colour

pkgdown

Generate static html documentation for an R package

poorman

A copy of dplyr verbs using only base R

r-for-teaching

Portable version of R and RStudio, with the AMR package and most tidyverse packages pre-installed

roxygen2

Generate R package documentation from inline R comments

scamR_prep

Gerrit, Johannes, Matthijs

scamRmatthijs

testrepo

tinytest

A lightweight, no-dependency, but full-featured package for unit testing in R