Matthijs Berends's repositories
a_new_instrument_for_microbial_epidemiology
This is my full PhD thesis in R Markdown (using the bookdown package), containing a PDF and EPUB file, and a website in the ‘docs’ folder with the integral content of the book. The shortened URL is git.io/PhDthesisAMR.
microorganisms
An R package containing data sets with up to date microbial taxonomy
AMR_data_analysis_with_R
Source code of the book: "Antimicrobial Resistance Data Analysis With R"
caret
caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models
certe-medical-epidemiology
Source universe for: certe-medical-epidemiology
gallery
Gallery of ggplot2 extensions
hashing
Simple Shiny app to encrypt data for safe, anonymised data transfer
mariana
A thTheme and RStudio theme from Sublime Text 3
Microsoft365R
R SDK for interacting with Microsoft 365 APIs
OpenCore-Legacy-Patcher
Experience macOS just like before
PhD_student_info
This is a simple repo with info for my (new) PhD students.
pillar
Format columns with colour
pkgdown
Generate static html documentation for an R package
poorman
A copy of dplyr verbs using only base R
r-for-teaching
Portable version of R and RStudio, with the AMR package and most tidyverse packages pre-installed
roxygen2
Generate R package documentation from inline R comments
scamR_prep
Gerrit, Johannes, Matthijs
tinytest
A lightweight, no-dependency, but full-featured package for unit testing in R