msberends

AMR

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

cleaner

Fast and Easy Data Cleaning (in R)

microorganisms

An R package containing data sets with up to date microbial taxonomy

a_new_instrument_for_microbial_epidemiology

This is my full PhD thesis in R Markdown (using the bookdown package), containing a PDF and EPUB file, and a website in the ‘docs’ folder with the integral content of the book. The shortened URL is git.io/PhDthesisAMR.

AMR_data_analysis_with_R

Source code of the book: "Antimicrobial Resistance Data Analysis With R"

plot2

A streamlined extension of 'ggplot2' designed to simplify and accelerate the creation of data visualisations. 'plot2' automates common tasks such as axis handling, plot type selection, and data transformation, allowing users to create complex, publication-ready plots with minimal code. It integrates seamlessly with the tidyverse.

sf

Simple Features for R

actions

GitHub Actions for the R community

ahon

amr-for-r-assistant

Just an HTML link to our AMR for R Assistant

auto-r-pkg-version

bartlett_et_al_2022_human_pathogens

caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

certe-medical-epidemiology

Source universe for: certe-medical-epidemiology

eucic2023

gallery

Gallery of ggplot2 extensions

hashing

Simple Shiny app to encrypt data for safe, anonymised data transfer

mariana

A thTheme and RStudio theme from Sublime Text 3

Microsoft365R

R SDK for interacting with Microsoft 365 APIs

msberends.r-universe.dev

OpenCore-Legacy-Patcher

Experience macOS just like before

PhD_student_info

This is a simple repo with info for my (new) PhD students.

pillar

Format columns with colour

pkgdown

Generate static html documentation for an R package

poorman

A copy of dplyr verbs using only base R

r-for-teaching

Portable version of R and RStudio, with the AMR package and most tidyverse packages pre-installed

roxygen2

Generate R package documentation from inline R comments

testrepo

tinytest

A lightweight, no-dependency, but full-featured package for unit testing in R

wikje

What the Package Does (One Line, Title Case)