simonrharris

SKA

Split Kmer Analysis

pyjar

A python implementation of the joint ancestral state reconstruction algorithm of Pupko et al

in_silico_pcr

Script to run an in silico pcr for a set of primer pairs on an assembly

tree_gubbins

Clustering of isolates on a phylogenetic tree using a spatial scan statistic

pairwise_difference_count

Counts pairwise differences between sequences in DNA alignments

PhyloCanvas

Phylogenetic tree visualisation for the web.

fast52fastq

Extracts fastq files from ONT fast5 files

Font.js

This library adds a new Font() object to the JavaScript toolbox, similar to new Image() for images

iCANDY

iCANDY for reviewers only

jsPDF

Generate PDF files in JavaScript. HTML5 FTW.

map_resistome

minimap2

A fast sequence mapping and alignment program

minimlst

pdfkit

HTML+CSS to PDF using wkhtmltopdf

phandangoExampleData

The data underlying the examples on https://jameshadfield.github.io/phandango

robin-hood-hashing

Fast & memory efficient hashtable based on robin hood hashing for C++14

treecompare

scripts for comparing a tree to a gold standard