Samuel Brand's repositories
MonkeypoxUK
Some code for monkeypox
kenya-covid-three-waves
Model supporting "COVID-19 Transmission Dynamics Underlying Epidemic Waves in Kenya"
KenyaCoVaccines
Vaccine modelling
ApproxBayes.jl
Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia
BTV-European-Reproductive-Ratios
MATLAB® code for creating daily reproductive ratios for BTV across Europe.
Climatic-Reproductive-Ratio-VBD
Code for introducing climate time series into climatic R calculations.
covid-policy-tracker
Systematic dataset of Covid-19 policy, from Oxford University
ebola_MCMC
Direct MCMC methods for Ebola
epi-examples-julia
Epi model examples in Julia
GpABC.jl
A fork of GpABC to try improving compatibility
HouseholdAndAgeRSVModel
Julia 0.6 code for running the household and age RSV model
measles-model-chicago-2024
Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Illinois, 2024", MMWR (2024)
MpxInc_2022
Incubation period for mokeypox
ReproductiveRatioVBD
Reproductive ratio
resources
Resources mostly related to statistics, computing in R, and research processes
RSV-transmission-model
Transmission model to evaluate the impact of RSV in England
RSVHouseholdModel
Julia 0.6 code for running the RSV Household transmission model (see https://www.biorxiv.org/content/10.1101/569335v1.abstract for preprint).
sampling_rt_vs_Rt
Sampling growth rates vs Rt
StateSpaceModels.jl
StateSpaceModels.jl is a Julia package for time-series analysis using state-space models.
UK-BTV-Model
C++ code to run a model simulating BTV spread between farms using climate data from 2007.
universal_differential_equations
Repository for the Universal Differential Equations for Scientific Machine Learning paper, describing a computational basis for high performance SciML