approximate-bayesian-computation

There are 2 repositories under approximate-bayesian-computation topic.

florent-leclercq / Bayes_InfoTheory
Lectures on Bayesian statistics and information theory
lecture-material bayesian-statistics information-theory data-analysis denoising deblending maxent decision-theory markov-chain-monte-carlo approximate-bayesian-computation likelihood-free-inference binary-channel machine-learning
Language:Jupyter Notebook 30
francescoalemanno / KissABC.jl
Pure julia implementation of Multiple Affine Invariant Sampling for efficient Approximate Bayesian Computation
bayesian-inference approximate-bayesian-computation statistical-inference probabilistic-inference bayesian-data-analysis kissabc julia-language
Language:Julia 29
neuralyzer / pyabc
pyABC: distributed, likelihood-free inference
python parallel-computing distributed-computing approximate-bayesian-computation sequential-monte-carlo
13
compops / gpo-smc-abc
Bayesian optimisation for fast approximate inference in state-space models with intractable likelihoods
gaussian-process-optimisation bayesian-optimization approximate-inference approximate-bayesian-computation stochastic-volatility-models alpha-stable-processes portfolio-analysis gaussian-processes particle-filter
Language:Python 12
dirmeier / sbijax
Simulation-based inference in JAX
abc approximate-bayesian-computation normalizing-flows python simulation-based-inference smc-abc
Language:Python 11
quetzal-CoaTL
Quetzal-framework / quetzal-CoaTL
A toolbox for C++ devs wanting to build geospatial population genetics simulators !
approximate-bayesian-computation c-plus-plus coalescence ecology-modelling genetics iddc simulation
Language:C++ 11
florent-leclercq / pyselfi
Simulator Expansion for Likelihood-Free Inference (SELFI): a python implementation
bayesian-data-analysis likelihood-free-inference approximate-bayesian-computation cosmology large-scale-structure galaxy-clustering
Language:Jupyter Notebook 10
diyabc / abcranger
ABC random forests for model choice and parameter estimation, pure C++ implementation
approximate-bayesian-computation estimate-parameters model-choice random-forest
Language:Jupyter Notebook 9
mauricelanghinrichs / ABCdeZ.jl
Approximate Bayesian Computation (ABC) with differential evolution (de) moves and model evidence (Z) estimates.
approximate-bayesian-computation bayesian-inference monte-carlo-methods posterior-probability statistical-inference julia model-selection parameter-estimation likelihood-free marginal-likelihood model-evidence
Language:Julia 9
NisanurBulut / MatlabImageProcessing
Adding Noise Noise Canceling Image resizing Resolution Study Filtering processes -Midic filter -Mean filter -Laplasian filter Photo Sharpening
matlob image-processing gaussian-filter fourier-transform laplace-smoothing edge-detection approximate-bayesian-computation saltandpepper correlation-matrices correlation-filters laplasian mean-filter
Language:MATLAB 8
JBris / model-calibration-evaluation
Evaluating model calibration methods for sensitivity analysis, uncertainty analysis, optimisation, and Bayesian inference
bayesian-optimization bayesian-statistics pymc sensitivity-analysis uncertainty-analysis polynomial-chaos polynomial-chaos-expansion differential-evolution-mcmc sobol-indices global-optimization approximate-bayesian-computation kriging surrogate-models optuna shuffled-complex-evolution likelihood-free-inference bolfi simulation-based-inference deep-learning generative-neural-network
Language:Python 7
ocramz / bayesian-inference
bayesian-inference bayesian-statistics inference statistical-learning machine-learning approximate-bayesian-computation approximate-inference statistical-inference machine-learning-library
Language:Haskell 7
JuliaApproxInference / LikelihoodfreeInference.jl
Likelihood-Free Inference for Julia.
abc approximate-bayesian-computation likelihood-free-inference approximate-bayesian-inference likelihood-free
Language:Julia 6
diyabc / diyabcGUI
User interface to DIYABC/AbcRanger
approximate-bayesian-computation population-genetics
Language:R 4
florent-leclercq / correlations_vs_field
Correlation functions versus field-level inference in cosmology: example with log-normal fields
cosmology cosmological-inference bayesian-data-analysis approximate-bayesian-computation simulation-based-inference likelihood-free-inference data-assimilation markov-chain-monte-carlo
Language:Jupyter Notebook 4
QuanticPony / Analysis-of-effectiveness-of-lockdown-policies-for-desease-containment
Trabajo de Fin de Grado de Física 2022
approximate-bayesian-computation bayesian-inference covid-19 epidemic-model epidemic-simulations quare
Language:Python 4
alex-schaaf / abc-geomodeling
Figuring out how Approximate Bayesian Computation works and how it can be applied to geological modeling.
approximate-bayesian-computation
Language:Jupyter Notebook 2
florent-leclercq / lotkavolterra_simulator
Simulator of the Lotka-Volterra prey-predator system with demographic and observational noise and biases
approximate-bayesian-computation biology ecological-modelling ecology likelihood-free-inference simulator
Language:Jupyter Notebook 2
ocbe-uio / elfi
A Python package for likelihood-free inference (LFI) methods such as Approximate Bayesian Computation (ABC)
likelihood-free-inference approximate-bayesian-computation sequential-monte-carlo bayesian-optimization hamiltonian-monte-carlo python-package
Language:Python 2
SamuelWiqvist / ApproximateBayesianComputation.jl
Julia implementation of some ABC algorithms.
julia-language approximate-bayesian-computation bayesian-methods
Language:Julia 2
SourabhKul / ABC-COVID-19-GPU-TPU
GPU and TPU implementation of parallelized ABC inference for a stochastic epidemiology model for COVID-19
gpu tpu epidemiology covid-19 high-performance-computing approximate-bayesian-computation simulation-based-inference
Language:Jupyter Notebook 2
alex-schaaf / ABCsampler
Simple model class and non-vectorized samplers for Approximate Bayesian Statistics (ABC)
approximate-bayesian-computation bayesian-methods
Language:Python 1
dirmeier / ssnl
Simulation-based inference using SSNL
approximate-bayesian-computation approximate-inference bayesian-inference jax normalizing-flows simulation-based-inference
Language:Python 1
diyabc / MER_publication_materials
Publication Materials for "Extending Approximate Bayesian Computation with Supervised Machine Learning to Infer Demographic History from Genetic Polymorphisms Using DIYABC Random Forest" in *Molecular Ecology Resources* special issue
approximate-bayesian-computation machine-learning model-choice parameter-estimation population-genetics random-forest shiny-apps
1
JuliaEpi / MathepiaInference.jl
Bayesian inference tools. Including state-of-the-art inference methods: HMC family, ABC family, Data assimilation, and so on. Part of Mathepia.jl
monto-carlo mcmc mcmc-sampler abc approximate-bayesian-computation likelihood-free-inference simulation-based-inference data-assimilation langevin-mc
Language:Julia 1
mqcase1004 / Tukey-Depth-ABC
Efficient Estimation of Generative Models using Tukey Depth
approximate-bayesian-computation parameter-estimation turkey-depth
Language:R 1
Adolphus8 / Approximate_Bayesian_Computation
Repository on Approximate Bayesian Computation and the different distance metrics which can be implemented.
approximate-bayesian-computation distance-metrics model-validation bayesian-model-updating stochastic-model-updating
Language:MATLAB 0
alixma / ABCAPTMC
Code for ABC-APTMC paper
mcmc markov-chain-monte-carlo abc approximate-bayesian-computation parallel-tempering bayesian-inference computational-statistics statistics anytime-algorithms anytime-monte-carlo
Language:MATLAB 0
AnthonyEbert / protoABC
R-package protoABC: Flexible approach to Approximate Bayesian Computation (ABC)
approximate-bayesian-computation bayesian-inference r-package
Language:R 0
Serock3 / TIF345-Advanced-simulation-and-machine-learning
Repo for projects in the Chalmers course "TIF345 / FYM345 Advanced simulation and machine learning" 2020. Authors: Sebastian Holmin and Erik Andersson
machine-learning simulation neural-network physics-simulation approximate-bayesian-computation
Language:Jupyter Notebook 0
sparklyworm / 4YP
4th Year Project - Optimal Control of Directed Evolution
approximate-bayesian-computation evolutionary-dynamics
Language:MATLAB 0
bgautijonsson / bggjphd
An R package to go along with my PhD research
approximate-bayesian-computation bayesian-inference phd spatio-temporal-data statistics
Language:R
Eawag-SIAM / SimulatedAnnealingABC.jl
Approximate Bayesian Computation algorithm based on simulated annealing
approximate-bayesian-computation approximate-bayesian-inference bayesian-inference mcmc-sampling
Language:Julia
tillahoffmann / summaries
Comparison of summary statistic selection methods with a unifying perspective.
conditional-density-estimation data-compression information-theory likelihood-free-inference simulation-based-inference summary-statistics approximate-bayesian-computation
Language:Python
tillahoffmann / summaries2
approximate-bayesian-computation likelihood-free-inference simulation-based-inference summary-statistics
Language:Python
zephyralistair / ABC-for-Voxelwise-Kinetic-Modeling
This repo contains code that implements vPET-ABC. Currently, we have included Python code attempting GPU acceleration on FDG compartment models.
approximate-bayesian-computation bayesian-statistics cupy fdg gpu-acceleration positron-emission-tomography kinectic-modeling
Language:Python

approximate-bayesian-computation

florent-leclercq / Bayes_InfoTheory

francescoalemanno / KissABC.jl

neuralyzer / pyabc

compops / gpo-smc-abc

dirmeier / sbijax

Quetzal-framework / quetzal-CoaTL

florent-leclercq / pyselfi

diyabc / abcranger

mauricelanghinrichs / ABCdeZ.jl

NisanurBulut / MatlabImageProcessing

JBris / model-calibration-evaluation

ocramz / bayesian-inference

JuliaApproxInference / LikelihoodfreeInference.jl

diyabc / diyabcGUI

florent-leclercq / correlations_vs_field

QuanticPony / Analysis-of-effectiveness-of-lockdown-policies-for-desease-containment

alex-schaaf / abc-geomodeling

florent-leclercq / lotkavolterra_simulator

ocbe-uio / elfi

SamuelWiqvist / ApproximateBayesianComputation.jl

SourabhKul / ABC-COVID-19-GPU-TPU

alex-schaaf / ABCsampler

dirmeier / ssnl

diyabc / MER_publication_materials

JuliaEpi / MathepiaInference.jl

mqcase1004 / Tukey-Depth-ABC

Adolphus8 / Approximate_Bayesian_Computation

alixma / ABCAPTMC

AnthonyEbert / protoABC

Serock3 / TIF345-Advanced-simulation-and-machine-learning

sparklyworm / 4YP

bgautijonsson / bggjphd

Eawag-SIAM / SimulatedAnnealingABC.jl

tillahoffmann / summaries

tillahoffmann / summaries2

zephyralistair / ABC-for-Voxelwise-Kinetic-Modeling