epidemic-modelling

There are 2 repositories under epidemic-modelling topic.

• epiverse-trace / cfr

  R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

  rr-packagecase-fatality-rateepidemiologyhealth-outcomesepidemic-modellingoutbreak-analysisepiversesdg-3
  Language:R 13

• epiverse-trace / finalsize

  R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

  rr-packageepiverseepidemiologyepidemic-modellingoutbreak-analysisrcppsdg-3
  Language:R 11

• Bigscity-epidemic / Epidemic-Modeling-survey

  covid-19epidemic-modelepidemic-simulationsepidemic-modelling
  Language:Python 9

• epiverse-trace / epidemics

  [Under active development] - A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

  epidemiologyr-packagerrcpprcppeigenepidemic-modellingepidemic-simulationsvaccinationinfectious-disease-dynamicsnon-pharmaceutical-interventionsmodel-librarydecision-supportscenario-analysisepiverse
  Language:R 8

• pitmonticone / EpiSimulator

  EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.

  mathematical-physicscomputational-epidemiologyapplied-mathematicsgraph-theorymathematical-epidemiologydigital-epidemiologynetwork-sciencecontact-networksmobility-networksagent-based-modelingagent-based-simulationnetwork-epidemiologydifferential-equationsstochastic-processesdynamical-systemstemporal-networksmetapopulationbehavioral-modellingsocial-networkepidemic-modelling
  Language:Jupyter Notebook 8

• epiverse-trace / bpmodels

  Methods for simulating and analysing the sizes and lengths of chains from branching process models

  branching-processepidemic-dynamicsepidemic-modellingepidemic-simulationsoutbreak-simulatorrr-packagetransmission-chaintransmission-chain-reconstructionepidemiologyepiverse
  Language:R 7

• JBris / sir-agent-based-modelling

  Agent-based modelling of pandemics using the Susceptible, Infected, Recovered (SIR) framework.

  agent-based-modelagent-based-modelingagent-based-simulationepidemic-modelepidemic-simulationsepidemicsepidemiologysiragent-basedagent-based-frameworkagent-based-modellingepidemicepidemic-modellingepidemiological-modelsepidemiological-predictions
  Language:Jupyter Notebook 5

• epiverse-trace / epichains

  [Not published - under active development] Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models

  branching-processesepidemic-dynamicsepidemic-modellingepidemic-simulationsoutbreak-simulatorr-packager-statstransmission-chaintransmission-chain-reconstructionepidemiologyepidemiology-models
  Language:R 4

• HySonLab / pandemic_tgnn

  Predicting COVID-19 pandemic by spatio-temporal graph neural networks https://arxiv.org/abs/2305.07731

  epidemic-modellinggraph-neural-networkspandemic-datatemporal-graph-learning
  Language:Python 4

• uros-bojanic / epidemic-modelling

  [Computer Modeling] SIR/SIRS/SIRQ/ISIR/SEIR compartmental models for numerical epidemic modelling in MATLAB.

  differential-equationsepidemic-modellingnumerical-simulationsir-model
  Language:MATLAB 4

• epiverse-trace / tutorials

  carpentries-workbenchenglish-languageoutbreak-analysispre-alpharstatsepidemic-modelling
  Language:R 3

• evertrustJ / EpiVis

  Epidemic visualization; Language: R.

  repidemic-dataepidemic-modelling
  Language:R 1

• Kai-Ref / DeepAR_InfluenzaForecast

  DeepAR implementation for seasonal influenza cases in German districts

  deeparepidemic-modellingepidemiological-predictionsepidemiologygluontshhh4influenzajupyter-notebookprobabilistic-forecastingpythonrray-tunesurveillance
  Language:Jupyter Notebook 1

• Pastells / covid_models

  Collection of epidemic models. Includes ODEs, stochastic and complex networks, with non-markovian distributions (Erlang type).

  covid-19epidemic-modellingoptimization
  Language:Python 1

• anapdinizm / epidemic-simulator

  A HTML/JavaScript simulator for an epidemc on a population

  covid-19epidemic-modellingepidemic-simulationsepidemiologysimulator
  Language:JavaScript 0

• andreehrlich / covid_mcmc_change_point_detection

  Epidemic Models. Bayesian Estimation (MCMC) of Change-Points in COVID-19 Reported Cases in 3 European Countries

  data-analysisepidemic-modellingepidemiologymcmcstatisticstime-series
  0

• leo-pfeiffer / epi-sim

  Repository for my MSc Thesis `A Web Application for Compartmental Network Models Illustrated Using COVID-19'

  epidemicssimulationepidemic-modellingnetwork-science
  Language:Python 0

• epiverse-trace / scenarios

  [SUSPENDED]: R package to compare epidemic scenario model outcomes.

  epidemiologyr-packageepidemic-modellingrepiverse
  Language:R

• R-N / prediksicovidjatim-core

  The core library of prediksicovidjatim

  covid-19forecastingarcgisgissir-modelpythonscrapinggeographical-information-systemmapscurve-fittingepidemic-modellinglmfittimelapseindonesiamachine-learning
  Language:Python

• R-N / prediksicovidjatim-map

  The map of prediksicovidjatim, built with Arcgis Wep Appbuilder Developer Edition.

  herokuarcgisgiscovid-19forecastingsir-modelepidemic-modellinggeographical-information-systemjavascriptjsmapstimelapseweb
  Language:JavaScript

• R-N / prediksicovidjatim-worker

  Worker of prediksicovidjatim

  herokuarcgisgisscrapingcovid-19forecastingsir-modelcurve-fittingepidemic-modellinggeographical-information-systemlmfitmapsindonesiamachine-learning
  Language:Jupyter Notebook