epiverse

There are 1 repository under epiverse topic.

• epiverse-trace / sivirep

  Data Wrangling and Automated Reports from 'SIVIGILA' source

  colombiaepidemiological-surveillanceepiversepublic-healthrr-package
  Language:R 27

• epiverse-trace / epiparameter

  R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters

  rr-packagedata-packagedata-accessepidemiologyprobability-distributionepiverse
  Language:R 21

• epiverse-trace / serofoi

  Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

  antibodiesbayesian-methodsepidemiologyepiverserr-packageserological-surveysstan-language
  Language:R 16

• epiverse-trace / cfr

  R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

  rr-packagecase-fatality-rateepidemiologyhealth-outcomesepidemic-modellingoutbreak-analysisepiversesdg-3
  Language:R 13

• epiverse-trace / finalsize

  R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

  rr-packageepiverseepidemiologyepidemic-modellingoutbreak-analysisrcppsdg-3
  Language:R 11

• epiverse-trace / vaccineff

  R package with tools for estimating vaccine effectiveness and vaccine related metrics

  epidemiologyepiverserr-packagevaccine-effectiveness
  Language:R 10

• epiverse-trace / cleanepi

  R package to clean and standardize epidemiological data

  data-cleaningepidemiologyepiverserr-package
  Language:R 8

• epiverse-trace / epidemics

  [Under active development] - A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

  decision-supportepidemic-modellingepidemic-simulationsepidemiologyepiverseinfectious-disease-dynamicsmodel-librarynon-pharmaceutical-interventionsrr-packagercpprcppeigenscenario-analysisvaccination
  Language:R 8

• epiverse-trace / linelist

  R package for handling linelist data

  datadata-structuresepidemiologyepiverseoutbreaksrr-packagesdg-3structured-data
  Language:R 8

• epiverse-trace / bpmodels

  Methods for simulating and analysing the sizes and lengths of chains from branching process models

  branching-processepidemic-dynamicsepidemic-modellingepidemic-simulationsoutbreak-simulatorrr-packagetransmission-chaintransmission-chain-reconstructionepidemiologyepiverse
  Language:R 7

• epiverse-trace / epiCo

  R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

  colombiadecision-supportdemographicsepiverseoutbreak-analysisrr-packagespatio-temporal-analysisvector-borne-diseases
  Language:R 5

• epiverse-trace / readepi

  An R package for importing epi data into R.

  data-importepidemiologyepiversehealth-information-systemsrr-package
  Language:R 5

• epiverse-trace / episoap

  [Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates

  epidemiologyliterate-programmingpipelinesrr-packagermarkdown-templatesdecision-supportoutbreak-analysisautomated-reportepiverse
  Language:R 4

• epiverse-trace / epiverse-trace.r-universe.dev

  R-universe for the epiverse-trace GitHub organisation

  infrastructureautomationcontinuous-deploymentepiverse
  4

• epiverse-trace / simulist

  An R package for simulating line lists

  epidemiologyepiverselinelistoutbreaksrr-package
  Language:R 4

• epiverse-trace / superspreading

  Estimation of individual level variation in transmission

  rr-packageepidemiologyepiversedisease-transmission
  Language:R 4

• epiverse-trace / blueprints

  Software development blueprints for epiverse-trace

  best-practicesepiverseinternal-docsonboardingr-package-developmentstandard-operating-procedurestandards
  Language:SCSS 2

• epiverse-trace / epiverse-trace.github.io

  Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

  blogepiversequarto-website
  Language:R 2

• epiverse-trace / epiverse

  Meta-package for the Epiverse-TRACE R packages

  epiverserr-package
  Language:R

• epiverse-trace / epiversetheme

  community-healthepiverseinfrastructureorganisation-toolpkgdown-templaterr-package
  Language:SCSS

• epiverse-trace / hex-stickers

  logosepiverse
  Language:JavaScript

• epiverse-trace / scenarios

  [SUSPENDED]: R package to compare epidemic scenario model outcomes.

  epidemiologyr-packageepidemic-modellingrepiverse
  Language:R