1000genomes
There are 0 repository under 1000genomes topic.
stephenturner / kgp
1000 Genomes Project Metadata R Package
Language:R 20- CATE
theLongLab / CATE
A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscripts: https://doi.org/10.1111/2041-210X.14168 and https://doi.org/10.1038/s41467-025-60988-8
Language:Cuda 15 pegasus-isi / 1000genome-workflow
Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project
Language:Jupyter Notebook 14hagax8 / ancestry_viz
GTM and t-SNE classification and clustering of 1000 Genomes Project populations
Language:Python 13- Language:JavaScript 8
- Language:C++ 7
brianhill11 / population-prediction-pca
Predicting 1000 Genomes population using PCA and a random forest classifier
Language:Jupyter Notebook 4- PCA-Ethnicity-Determination-from-WGS-Data
laura-budurlean / PCA-Ethnicity-Determination-from-WGS-Data
A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.
Language:Shell 4 - Language:Python 4
- Language:Python 4
juliedwhite / GenotypeProcessing
Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation
Language:Python 3collaborativebioinformatics / Blended_seq_imputation
a Nextflow pipeline for generating imputation reference panels using 1000 Genomes and HGDP data to enhance variant calling in Blended Genome Exome sequencing
Language:Jupyter Notebook 2Shaked35 / Genome-AC-GAN
This repository provides tools to train and evaluate the Genome-AC-GAN model for generating realistic artificial human genomes.
Language:Jupyter Notebook 2- Language:HTML 2
1tilly / wgs-exercise
The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.
Language:Python 1eliorav / Population-Genotype-Frequency
A Python script that generate population genotype frequency file from 1000G data
Language:Python 1- Language:C++ 1
joe-nas / haploplotR
Visualizing Linkage Disequilibrium using 1000 Genomes Data
Language:R 1- Language:Python 1
RajLabMSSM / echoLD
echoverse module: LD downloading and processing
Language:R 1- Language:Python 0
Fun-Gene / PieMap
Attain and plot the allele frequency distribution of SNPs based on our merged data from 1000 Genome Project.
Language:R 0GiatrasKon / Chromosome11-VariantCalling-GATK
A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.
Language:R 0hwittich / Benchmarking_Pop_Structure_Tools
BIOI500 - Advanced Bioinformatics final project at Loyola University Chicago.
0- Language:Jupyter Notebook
dlcgold / muPBWT-1KGP-workflow
Snakemake workflow to test μ-PBWT against PBWT and Syllable-PBWT
Language:Python
