1000genomes

There are 0 repository under 1000genomes topic.

• stephenturner / kgp

  1000 Genomes Project Metadata R Package

  1000genomesbioinformaticsgeneticsgenomicsmetadatapopulation-geneticssequencing
  Language:R 18

• hagax8 / ancestry_viz

  GTM and t-SNE classification and clustering of 1000 Genomes Project populations

  gtmt-snegenerative-topographic-mappingancestry1000genomesclustering
  Language:Python 11
• CATE

  theLongLab / CATE

  A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.

  1000genomescudacuda-programmingevolutionary-algorithmsevolutionary-biologyevolutionary-computationgenetic-algorithmgeneticsneutrality-testvcfvcf-datavcf-filescuda-toolkitehhextended-haplotype-homozygositymk-testneutralitytajima
  Language:Cuda 11

• slowkow / snpbook

  :orange_book: Explore 1000 Genomes variant data with JavaScript.

  1000genomeslinkage-disequilibriumjavascriptd3
  Language:JavaScript 8

• pegasus-isi / 1000genome-workflow

  Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project

  1000genomespegasus-wmsscientific-workflows
  Language:Jupyter Notebook 7

• dlcgold / muPBWT

  A PBWT-based light index for UK Biobank scale genotype data.

  1000genomespbwtrun-length-encodingukbiobank
  Language:C++ 6

• tbrunetti / GP3

  GWAS Pre-Processing Pipeline

  gwas-pipelinegwasquality-metricsquality-assurancequality-controlhardy-weinberg-equilibriumheterozygositylinkage-disequilibriumpca1000genomesminor-allele-frequencyidentity-by-descent
  Language:Python 4

• wugene / RADAR_SNP

  Find risk snp in the LD region of GWAS snps by convolutional neural network

  gwasimputationsnpsfine-mappingdeep-neural-networksconvolutional-neural-networksepigenomics1000genomes
  Language:Python 4

• brianhill11 / population-prediction-pca

  Predicting 1000 Genomes population using PCA and a random forest classifier

  1000genomesmachine-learningpcarandom-forest
  Language:Jupyter Notebook 3

• juliedwhite / GenotypeProcessing

  Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation

  genotypeprocessing1000genomes
  Language:Python 3
• PCA-Ethnicity-Determination-from-WGS-Data

  laura-budurlean / PCA-Ethnicity-Determination-from-WGS-Data

  A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.

  1000genomesancestryancestry-estimationancestry-inferenceethnicityethnicity-analysisethnicity-classifierethnicity-predictionngspcaprincipal-component-analysiswgs
  Language:Shell 2

• sinarueeger / map-1000genomes

  Map 1000genomes location to a worldmap

  1000genomesleaflet
  Language:HTML 2

• 1tilly / wgs-exercise

  The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.

  bioinformaticsbcftoolsvcf-files1000genomespython3python
  Language:Python 1

• eliorav / Population-Genotype-Frequency

  A Python script that generate population genotype frequency file from 1000G data

  1000genomesallele-frequenciesdockerpython
  Language:Python 1

• himamis / parse-vcf

  An extendable parser for vcf files written in C++

  1000genomesgeneticsparservcfvcf-files
  Language:C++ 1

• RajLabMSSM / echoLD

  echoverse module: LD downloading and processing

  echoverselinkage-disequilibriumgenomicsukbiobank1000genomes
  Language:R 1

• tbrunetti / CoVE

  Concordance Validation across Experiments

  1000genomeshapmaptgpconcordancevalidationsnpsarraypipeline
  1

• eliorav / 1000G-downloader

  download samples from 1000G

  1000genomes
  Language:Python 0

• Fun-Gene / PieMap

  Attain and plot the allele frequency distribution of SNPs based on our merged data from 1000 Genome Project.

  1000genomesallele-frequency-distributionrvisualization
  Language:R 0

• hwittich / Benchmarking_Pop_Structure_Tools

  BIOI500 - Advanced Bioinformatics final project at Loyola University Chicago.

  1000genomesbenchmarking-studypcaplinkpopulation-structurebashpythonr
  0

• joe-nas / haploplotR

  Visualizing Linkage Disequilibrium using 1000 Genomes Data

  1000genomesbioinformaticslinkage-disequilibriumr
  Language:R 0

• Shaked35 / Genome-AC-GAN

  This repository provides tools to train and evaluate the Genome-AC-GAN model for generating realistic artificial human genomes.

  1000genomesacganarticlebioinformaticscgangangenerative-adversarial-networkgenomic-data-analysisgenomicsgenotype
  Language:Jupyter Notebook 0

• dlcgold / muPBWT-1KGP-workflow

  Snakemake workflow to test μ-PBWT against PBWT and Syllable-PBWT

  1000genomespbwtsnakemake
  Language:Python