spike-sorting
There are 8 repositories under spike-sorting topic.
SpikeInterface / spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
Language:Python 681- KilosortLanguage:Python 566
ramintoosi / ROSS
Robust Offline Spike Sorter
Language:Python 138csn-le / wave_clus
A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering
Language:MATLAB 135Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.
Language:Python 117spyking-circus / spyking-circus
Fast and scalable spike sorting in python
Language:Python 95- spike_sorting
akcarsten / spike_sorting
Python implementation of signal processing techniques and K-means clustering to sort spikes.
Language:Jupyter Notebook 85 - Language:Python 70
LiuLab-Bioelectronics-Harvard / SpikeAgent
SpikeAgent is a multimodal LLM-based AI agent that automates and standardizes the spike sorting pipeline
Language:Python 56Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
Language:Python 50- Language:Python 46
- Language:Jupyter Notebook 30
scratcharchive / mountainsort_examples
Examples of using MountainSort spike sorting software.
Language:Jupyter Notebook 28Python-based module with spike sorter wrappers and a simple API for running them.
Language:Python 20sg-s / crabsort
🦀🦀🦀 Sort spikes from extra-cellular recordings using neural networks. Fully automated.
Language:MATLAB 19flatironinstitute / dendro-old
Analyze neuroscience data in the cloud
Language:TypeScript 18A GUI for running popular spike sorting algorithms on extracellular data of any file format.
Language:Python 16jwouters91 / shybrid
a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance
Language:Python 10katzlabbrandeis / blech_clust
A comprehensive Python and R-based toolkit for clustering and sorting electrophysiology data recorded using Intan RHD2132 chips. Originally developed for cortical multi-electrode recordings in the Katz Lab at Brandeis University, it provides a complete pipeline for spike sorting, EMG analysis, and quality assessment.
Language:Python 9lavanv1107 / deepspikesort
An automated, end-to-end, machine-learning-based spike sorting pipeline following the DeepCluster method
Language:Python 7Stable and aligned spike sorting and decoding over long-term recordings in BCI
Language:Jupyter Notebook 7- spikesorting_fullpursuit
njh27 / spikesorting_fullpursuit
Neural spike sorting algorithm based on iso-cut clustering and template matching in raw voltage space for the detection of near-simultaneous spike events.
Language:Python 7 Offline real time (ort) implementation of SpyKING CIRCUS
Language:Python 6tk-neuron / GLMCC
Python Implementation of GLMCC (generalized linear model for spike cross-correlations)
Language:Python 6msdkhani / PyWaveClus
WaveClus: Unsupervised Spike Sorting Algorithm
Language:Python 4ArdeleanRichard / Autoencoders-in-Spike-Sorting
A study of how autoencoders fare in the domain of Spike Sorting. Various autoencoder architectures have been tested.
Language:Python 3christophe-pouzat / PouzatDetorakisEuroScipy2014
A reproducible document with an extended version of SPySort: Neuronal Spike Sorting with Python Proceedings of the 7th European Conference on Python in Science (EuroSciPy 2014), edited by Pierre de Buyl and Nelle Varoquaux, pp. 27–34.
Language:Python 3- Language:C 3
[no longer supported] for a more powerful version of this that supports multiple channels and uses machine learning, look here ➡️
Language:MATLAB 3- Language:MATLAB 3
Aleman-Z / spikesorting
Automatic and manual spike sorting based on SpikeInterface
Language:Python 2delunapaolo / OSSA
OSSA (Open-Source Sorting Algorithm) is an interactive software for manual curation of neural spikes.
Language:Python 2edmerix / UnitSubclassify
GUI for semi-automatic single neuron classification by cell type
Language:MATLAB 2IgarashiAkatuki / HuiduRep
Representation Learning Framework for Extracellular Recordings. An end-to-end pipeline for spike sorting.
Language:Python 2- SynaptiConn
mzabolocki / SynaptiConn
A Python package for analyzing single-unit spike-sorted data to infer synaptic connections in neural circuits.
Language:Python 2 RezaSaadatyar / Neurophysiological-Signal-Processing-and-Analysis
This repository contains extensive tools and scripts for processing and analyzing neurophysiological signals. The primary focus is on various critical aspects of neurophysiological data handling, including spike detection, feature extraction, clustering, and firing rate analysis.
Language:MATLAB 2
