Turaga Lab

DECODE

This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

flybody

MuJoCo fruit fly body model and reinforcement learning tasks

flyvis

A connectome constrained deep mechanistic network (DMN) model of the fruit fly visual system

malis

MALIS structured loss function for supervised learning of segmentation and clustering

wormvae

Connectome-constrained Latent Variable Model of Whole-brain Neural Activity, ICLR 2022

snapshotscope

Differentiable 4f microscope/phase mask simulation

vae

Model-agnostic variational autoencoder tools

nyroglancer

jupyter notebook extension to visualize numpy arrays with the neuroglancer

slurm_cluster

Configuration files, scripts, and howtos for using the slurm cluster.

decode_fish

fouriernet

Implementation of Fourier convolution and FourierNet/FourierUNet in JAX and PyTorch

jhu-janelia-2023-ml-demo

Demo notebooks for JHU bootcamp at Janelia 2023

MSRI2018_PupilCodedMicroscope

MSRI 2018 summer school (Group 7)

PyGreentea

SplinePSF

stcnn

spatiotemporal convnet for modeling visual neuron responses

greentea_training_template

gunpowder_examples

Example scripts for gunpowder training and prediction.

syntist_progress_report

Show progress and current results in syntist project

system_setup

Scripts and docs describing system configuration.

caffe-janelia

DVIDSparkServices

Spark implemented EM reconstruction software workflows

dvision

Python client for the DVID database

flyem-dockerfiles

Docker Files for Fly EM Software

greentea-docker

gunpowder

Data loading DAG for Greentea.

ipp-tools

Collection of IPyParallel tools and helper scripts

optoConn

Active causal connectivity inference

spark-janelia

Scripts for using Spark on Janelia's HPC

turagalab.github.io