jefferis

Gregory Jefferis's repositories

nabor

R package wrapping libnabo: fast K Nearest Neighbor search for low dimensions

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gphys

R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro

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readobj

R package providing fast reader for Wavefront OBJ 3D scene files

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cmtk

Unofficial git clone of Computational Morphometry Toolkit (CMTK)

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IgorR

R package to load Igor Pro waves (ibw) and experiment files (pxp) in R

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AnalysisSuite

R Neuron Analysis Suite provides functions to read/write/analyse neuroanatomical data

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hxNrrdIO

a library for Amira 3d Visulisation Software to read/write data in the Nrrd Image format

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RANN2

Fast Nearest Neighbour Search (Rcpp wrapper for libANN)

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vfbr

R Package to Access the Virtual Fly Brain project API

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bmp

A simple R package to read Windows BMP format images

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manifoldreduction

Manifold Dimension Reduction after Chigirev and Bialek

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nat.ants

Bridge neuroanatomy toolbox ('nat') and 'ANTs' registration tools

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Rvcg

R-package providing mesh manipulation routines from VCGLIB

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cachem

Key-value caches for R

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cmtkr

R wrapper package for the Computational Morphometry Toolkit (CMTK)

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dash

RStudio Addin to Run a Selection as a Background Job

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flynblastscores

R package to provide RESTful interface via opencpu to NBLAST scores for fly neurons

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gscraper

Basic web scraping - designed to generate local cache of remote website

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jefferis.github.io

user level github pages site

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Morpho

R-package providing a toolset for (3D-based) Geometric Morphometrics

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nat.amira

Interface Between NeuroAnatomy Toolbox and Amira Visualisation Software

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paperutils

R package with utility functions to support preparation of journal articles

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qs

Quick serialization of R objects

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r-natverse

Batteries included docker image for full natverse

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razip

Efficient Random Access to R Objects Stored in Large Zip Files

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rJava

R to Java interface

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treedata-book

:books: a complete reference book for treeio, tidytree and ggtree packages

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xtensor-r

R bindings for xtensor

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Xtensor.R

R package for xtensor-r

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zip

Platform independent zip compression via miniz

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