Drosophila Connectomics group (flyconnectome)

Drosophila Connectomics group

flyconnectome

Geek Repo

Drosophila Whole Brain Connectomics

Location:Cambridge, UK

Home Page:https://www.zoo.cam.ac.uk/research/groups/connectomics

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Drosophila Connectomics group's repositories

flywire_annotations

Supplemental data for Schlegel et al. (2023)

Language:Jupyter NotebookStargazers:14Issues:5Issues:0

coding-club

File sharing for the tracers' R club

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catbot

Slack bot to interface with CATMAID server, NBLAST and Zotero

Language:PythonLicense:GPL-3.0Stargazers:4Issues:5Issues:15

2020hemibrain_examples

Code examples for Schlegel, Bates et al. (2020)

CloudVolumeServer

Flask application to serve data via CloudVolume

Language:PythonLicense:BSD-2-ClauseStargazers:2Issues:6Issues:0

cocoa

Comparative Connectomics for Python

Language:PythonLicense:GPL-3.0Stargazers:2Issues:4Issues:2

ol_annotations

Annotations for Drosophila Optic Lobe neurons linking the FAFB-FlyWire and Male CNS Optic Lobe datasets

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ALPN_crossmatching

Data and code snippets for cross-matching olfactory PNs between FAFB (left + right) and hemibrain

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bigclust

Tools to visualize and annotate big clusterings

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fancr

Support Acccess to the Female Adult Nerve Cord (FANC) Dataset

Language:RLicense:GPL-3.0Stargazers:1Issues:4Issues:2

flyconnectome

Profile repository

tools

Overview of neuroscience tools developed in the Fly Connectomics group (University of Cambridge) and the Jefferis lab (MRC-LMB)

dvid_tools

Python tools to query a DVID server

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hemibrain_olf_data

Summary data on identified FIB hemibrain neurons including olfactory PNs

Language:RLicense:MITStargazers:0Issues:7Issues:10

tracerutils

R tools for EM tracers

Language:RLicense:GPL-3.0Stargazers:0Issues:7Issues:26

catmaid_server_tests

testing latency of image server

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fafbseg-py-media

Repository for fafbseg-py media

License:BSD-3-ClauseStargazers:0Issues:4Issues:0

hi-mc-examples

Data & code for the HI-MC project

License:GPL-3.0Stargazers:0Issues:0Issues:0

hnf

Documentation for the hierarchical neuron format

License:GPL-3.0Stargazers:0Issues:5Issues:0

Install_instructions

Repo for install instructions for various software and various machine types.

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nblast-scoremats

Collection of scoring matrices for NBLAST

License:GPL-3.0Stargazers:0Issues:5Issues:0

neuprint-python

Python client utilties for interacting with the neuPrint connectome analysis service

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temca2data

Public code for Zheng, Lauritzen et al. (2017)

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