animal-behavior

There are 5 repositories under animal-behavior topic.

BORIS
olivierfriard / BORIS
Behavioral Observation Research Interactive Software
animal-behavior animal-behaviour behavior-analysis ethology video-coding
Language:Python 185
sutdcv / Animal-Kingdom
[CVPR2022] Animal Kingdom: A Large and Diverse Dataset for Animal Behavior Understanding
dataset video-grounding action-recognition pose-estimation cvpr2022 meta-learning long-tailed-distribution multi-label-action-recognition animal-behavior ethology animal-behavioral-understanding
Language:Python 135
16EAGLE / moveVis
An R package providing tools to visualize movement data (e.g. from GPS tracking) and temporal changes of environmental data (e.g. from remote sensing) by creating video animations.
animal-behavior animal-environment animal-movement animal-tracking animation movement-ecology movement-video r remote-sensing visualization
Language:R 132
traja-team / traja
Python tools for spatial trajectory and time-series data analysis
animal-behavior python spatial-data-analysis time-series-analysis trajectory-analysis
Language:Jupyter Notebook 107
SchwarzNeuroconLab / DeepLabStream
Closed-loop behavioral experiment toolkit using pose estimation of body parts.
animal-behavior animal-science behavior-analysis closed-loop-experiments deeplabcut neuroscience-methods
Language:Python 54
jonnew / Oat
Real-time position tracker for behavioral research
animal-behavior augmented-reality c-plus-plus computer-vision electrophysiology neuroscience pose-estimation science
Language:C++ 49
vocalpy / vocalpy
A core package for acoustic communication research in Python
acoustic-communication animal-behavior bioacoustics python vocalizations
Language:Python 34
swarm-lab / trackR
trackR - A simple video tracking software for R
animal-behavior animal-behaviour animal-tracking object-detection object-tracking r tracking video
Language:R 33
RRemelgado / rsMove
Remote Sensing for Movement Ecology
remote-sensing movement-ecology r spatial-analysis animal-behavior machine-learning ecology animal-behaviour
Language:R 31
m1rza-s / Cellsim-2
Simulating complete lives of different cellular animals and plants. Evolution, inheritance, predation and more.
java javafx simulation zero-player-game cellular-automata evolution emergent-behavior cellsim 2d-graphics cellular-automatons cellularautomata animal-behavior mutations breeds
Language:Java 29
TheChymera / behaviopy
Behavioral data analysis and plotting in Python.
animal-behavior data-science plotting multimodality foss biomedical
Language:Python 26
MSQNet
mondalanindya / MSQNet
Actor-agnostic Multi-label Action Recognition with Multi-modal Query [ICCVW '23]
action-recognition animal-behavior charades hmdb51 video-representation-learning vision-and-language vision-language vision-transformer zero-shot-classification
Language:Python 23
swarm-lab / swaRm
A R package to process and analyze collective behavior data
animal-behavior animal-behaviour collective-behavior collective-behaviour r
Language:R 21
UMATracker / UMATracker
UMATracker = Useful Multiple Animal Tracker
object-detection object-tracking computer-vision animal-behavior
Language:NSIS 17
adamspierer / FreeClimber
FreeClimber is a background-subtracting particle detection platform designed to quantify group climbing performance in a Drosophila negative geotaxis (climbing) assay
animal-behavior animal-movement background-subtraction climbing drosophila drosophila-behaviour flies local-linear-regression locomotion particle-detection python3 rapid-iterative-negative-geotaxis scientific-research scientific-software
Language:Python 16
unl-cchil / canine_precise_dispenser
This project has the source files for the precise treat dispenser for canine cognition experiments.
dispenser canine animal-behavior
Language:G-code 16
calbertsen / argosTrack
R package for fitting animal movement models to Argos (or other types of location) data
r argos-data animal-behavior animal movement-ecology movement gps-data tracking c-plus-plus solar-geolocator r-package
Language:R 12
CameraTrapDetectoR / CameraTrapDetector
CameraTrapDetector: Detect, classify, and count animals in camera trap images
deep-learning image-classification machine-learning animal-behavior
Language:R 11
backprop64 / DAMM
A codebase for tracking laboratory mice in videos
animal-behavior computer-vision mouse-behavior mouse-tracking video-tracking
Language:Python 10
carlwharris / DeepAction
Toolbox for classification of animal behavior in video
action-recognition animal-behavior behavior-analysis deep-learning machine-learning
Language:MATLAB 9
movedesign
ecoisilva / movedesign
An application that aims to assist researchers in designing animal tracking projects, by considering specific research questions.
ecology r shiny shiny-apps study-design movement-ecology animal-behavior animal-movement animal-tracking experimental-design
Language:R 9
JackieZhai / SiamBOMB
SiamBOMB: Siamese network using Background information for real-time Online Multi-species home-cage animal Behavioral analysis. (Updating)
siamese-networks animal-behavior video-tracking video-segmentation
Language:Python 9
Dead-reckoning-animal-movements-in-R
Richard6195 / Dead-reckoning-animal-movements-in-R
R functions to dead-reckon reckon animal movement from raw motion sensor data
biologging animal-tracking animal-behavior dead-reckoning animal-movement drift-correction tilt-compensated-compass
Language:R 8
Ax3man / trackr
Analyze and Visualize Tracking Data
analysis animal-behavior plotting r
Language:R 6
MotionGlyphs
eren-ck / MotionGlyphs
Visual Abstraction of Spatio-Temporal Networks in Collective Animal Behavior (EuroVis2020)
spatio-temporal-analysis spatio-temporal-data dynamic-networks dynamic-network dynamic-graphs collective-behavior collective-behaviour animal-behavior animal-movement animal-behaviour
Language:JavaScript 6
spluque / diveMove
diveMove is a GNU R package with tools to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. It also provides miscellaneous functions for handling location data.
animal-behavior biology behavioural-ecology diving science
Language:TeX 6
earnestt1234 / FED3_Viz
a GUI for plotting FED3 data
neuroscience operant-conditioning python tkinter open-source behavior animal-behavior
Language:Python 5
MeysamAmirsardari / PoseModel
PoseModel: An Open-Source Toolkit for Accurate and Robust Automated Behavioral Latent Embedding
deeplabcut animal-tracking behavioral-analysis animal-behavior representation-learning latent-embedding gnn pyg variational-autoencoder
Language:Jupyter Notebook 5
michaelrauscher / DLT2DLC
Function for converting DLTdv tracking files into labeled training data for DeepLabCut pose estimation package
deeplabcut matlab animal-behavior biomechanics
Language:MATLAB 5
haiderlab / DP-Lick-Detector
Distribution Package for Dual Port Lick Detector
animal-behavior neuroscience-methods neuroscience lick
4
jgraving / DeepPoseKit-Annotator
a toolkit for annotating images with user-defined keypoints
pose-estimation behavior gui annotations keypoints pose animal-behavior deepposekit
Language:Python 4
trackdf
swarm-lab / trackdf
A data frame class for tracking data
animal-behavior animal-behaviour gps gps-data r
Language:HTML 4
alvaro-concha / animal-behavior-analysis
animal-behavior-analysis is a Python repository to analyze animal behavior in an unsupervised fashion. It uses UMAP dimensionality reduction and watershed segmentation to classify preprocessed animal behavior data obtained from video-tracking animal body parts with LEAP or DeepLabCut.
animal-behavior umap neuroscience unsupervised-machine-learning analysis watershed-algorithm data-visualizations
Language:Jupyter Notebook 3
Hetav01 / Behavior-Detection-by-Pose-Estimation-in-Animals
In this research, we have proposed a method for quantifying the behaviour of pets using pose estimations.
animal-behavior pose-estimation deep-learning neural-networks
3
nusretipek / HierarchiaPy
HierarchiaPy is an optimized statistical package for animal hierarchy/dominance analysis methds.
animal-behavior dominance dominance-statistics hierarchy-analysis
Language:Python 3
roaldarbol / anibehavr
🪲 An R package for Analysis of Animal Behaviour
data-analysis r animal-behavior behavioural-states
Language:R 3