neuroscience-methods

There are 16 repositories under neuroscience-methods topic.

CEBRA
AdaptiveMotorControlLab / CEBRA
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
contrastive-learning machine-learning neuroscience-methods pytorch
Language:Python 858
asoplata / open-computational-neuroscience-resources
A publicly-editable collection of open computational neuroscience resources
neuroscience neuroscience-data neural-simulators neuroimaging-data electrophysiological-data neuroscience-methods computational-neuroscience computational-biology awesome awesome-list open-science neural-simulations brain neuron-models simulation-neuroscience
530
neurolib-dev / neurolib
Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬
neuroscience neuroscience-methods computational-neuroscience mean-field-theory neural-networks brain-network brain-simulations brain-modeling
Language:Python 393
EEGEdu
kylemath / EEGEdu
Interactive Brain Playground - Browser based tutorials on EEG with webbluetooth and muse
eeg openbci ecg muse js data-visualization data-analysis plotting react-native bci neurotech educational neuroscience-methods brain-waves frequency-domain muse-data eeg-data muse-lsl muse-headsets curriculum
Language:JavaScript 167
MouseLand / rastermap
a visualization method for neural data
neuroscience neuroscience-methods unsupervised-clustering
Language:Python 166
Mark-Kramer / Case-Studies-Python
An introduction to the practicing neuroscientist to data analysis in Python
python neuroscience-methods neuroscience-data data-analysis
Language:Jupyter Notebook 140
JATOS / JATOS
Just Another Tool for Online Studies
online-studies online-experiment neuroscience neuroscience-methods psychology-experiments psychology jatos
Language:JavaScript 80
tbrouns / eyestalker
Robust video-based eye tracking using recursive estimation of pupil characteristics
eye-tracking pupil-detection recursive-estimation pupil-characteristics neuroscience-methods open-source video-oculography prediction algorithm gui
Language:C++ 65
themattinthehatt / behavenet
Toolbox for analyzing behavioral videos and neural activity
behavioral-videos computer-vision neuroscience-methods
Language:Python 57
SchwarzNeuroconLab / DeepLabStream
Closed-loop behavioral experiment toolkit using pose estimation of body parts.
neuroscience-methods behavior-analysis animal-behavior animal-science deeplabcut closed-loop-experiments
Language:Python 51
shlizee / NeuroAI
NeuroAI-UW seminar, a regular weekly seminar for the UW community, organized by NeuroAI Shlizerman Lab.
ai neuroscience-methods neural-networks data-science icml cvpr eccv sfn neurips recurrent-neural-networks deep-learning
50
yulewang97 / ERDiff
[NeurIPS'23 Spotlight] Official Repo for "Extraction and recovery of spatio-temporal structure in latent dynamics alignment with diffusion models"
diffusion-models domain-adaptation neural-alignment neuroscience-methods
Language:Python 40
bahanonu / imaging_tools
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
calcium-imaging imaging imaging-informatics imaging-analysis neuroscience neuroscience-methods motion-correction signal-extraction
38
jajcayn / pygpso
Gaussian-Processes Surrogate Optimisation in python
optimisation bayesian-optimisation gaussian-processes space-partition-tree python3 neuroscience neuroscience-methods gaussian-processes-surrogate scale-biophysical-models partition-tree gpflow brainweb
Language:Python 19
PennLINC / CuBIDS
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
neuroimaging neuroimaging-data-science python-package data-curation data-organization neuroscience neuroscience-methods neuroinformatics
Language:Python 19
naplab / naplib-python
Tools and functions for neural data processing and analysis in python
neuroscience neuroscience-methods acoustic-features auditory-cortex auditory-stimuli python
Language:Python 18
BrainDynamicsUSYD / NeuroPattToolbox
MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney
neuroscience-methods neuroimaging-analysis optical-flow
Language:MATLAB 14
electroCUDA
kevmtan / electroCUDA
Robust electrophysiology tools with GPU acceleration
electrophysiology ieeg seeg eeg eeg-analysis eeg-classification eeg-components eeg-pipeline eeg-preprocessing eeg-signals eeg-signals-classification eeg-signals-processing eeg-statistics ica intracranial-eeg meg neuroscience neuroscience-methods neurosurgery signal-processing
Language:Cuda 14
phildean / SPM_fMRI_Example_Pipeline
Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis
matlab spm fmri fmri-preprocessing fmri-data-analysis fmri-task-based-analysis neuroimaging neuroscience-methods neuroscience psychology
Language:MATLAB 14
bsotomayorg / SpikeShip
SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.
neuroscience-methods pattern-detection population-coding python spike-trains spike-timing
Language:Jupyter Notebook 13
BRAPH
braph-software / BRAPH
Brain Analysis using Graph Theory
neuroscience neuroscience-methods brain-connectivity brain-connectome
Language:MATLAB 12
hochbaumGroup / HNCcorr
HNCcorr algorithm for neuron identification in calcium imaging datasets.
calcium-imaging neuroscience neuroscience-methods
Language:Python 12
ccli3896 / RLWorms
Setting up C elegans as an RL environment.
c-elegans neuroscience-methods reinforcement-learning-environments
Language:Jupyter Notebook 11
sahahn / BPt
The Brain Predictability toolbox (BPt), is a python based Machine Learning library designed primarily for tabular and neuroimaging specific neuroimaging data but can easily be generalized further.
bpt brain-predictability-toolbox neuroimaging-data machine-learning python sklearn pandas neuroscience neuroscience-methods ml data-science data-analysis bp
Language:Python 11
sync2brain / bossdevice-api-matlab
sync2brain's bossdevice RESEARCH Application Programmable Interface (API) for MATLAB
neurostimulation neuroscience neuroscience-methods eeg eeg-signals eeg-signals-processing brainstimulation brainscience bossdevice bossdeviceapi oscillations brainoscillation tacs realtimeeg real-time-processing real-time-systems signalprocessing digital-signal-processing digitalbiosignalprocessing
Language:MATLAB 9
soheilbr82 / BluegrassWorkingMemory
A setup to evaluate working memory using EEG signals
dms eeg keypresses labstreaminglayer lsl neurofeedback neuroscience neuroscience-methods pexpect psychopy pylsl sternberg streams working-memory
Language:Python 8
altunenes / Part-Whole
Swap facial landmarks(or whole facial area) for the part-whole task with OpenCV + dlib and MediaPipe.
dlib face mediapipe neuroscience-methods opencv part-whole psychology
Language:Python 7
AminAlam / Dynamics-of-Computational-Neuron-Models
Neural simulations using Brian2 Python Package
brian2 neuroscience-methods hodgkin-huxley-model fitzhugh-nagumo-model synapses-simulations
Language:Jupyter Notebook 7
BrainDynamicsUSYD / BrainPalimpsest
Matlab toolbox to deconvolve BOLD-fMRI data. It produces the underlying spatiotemporal neural and hemodynamic activity
fmri neuroscience neuroscience-methods neuroimaging-analysis
Language:MATLAB 7
EvolutionOfCorticalShape
cirmuw / EvolutionOfCorticalShape
Data and tools from the publication "Evolution of Cortical Geometry and its Link to Function, Behaviour and Ecology" by Schwartz et al. for mapping values defined on cortical surfaces between species based on their phylogenetic relationship
evolution geometry morphology neuroimaging neuroimaging-data neuroscience neuroscience-methods surface
Language:Shell 7
dpshorten / CoTETE.jl
Continuous-Time Event-based Transfer Entropy
transfer-entropy spike-trains julia neuroscience neuroscience-methods data-analysis information-theory python
Language:Julia 7
NathanKlineInstitute / OEvent
Neural oscillation event detection and analysis
oscillations neuroscience-methods electrophysiology wavelets eeg signal-processing simulation
Language:Python 7
sammosummo / Charlie2
Open-source neurocognitive test battery written in Python
neuroscience-methods psychology-experiments python pyqt neuroscience python36 pyqt5 psychophysics psychology cognitive-neuroscience
Language:Python 7
nel-lab / mesmerize-napari
Mesmerize plugin for the napari viewer
calcium-imaging calcium-imaging-analysis neuroimaging neuroscience neuroscience-methods neuroscience-data
Language:Python 6
neuroinformatics-unit / rsp-vision
Analysis and visualization of calcium imaging data from retrosplenial cortex
neuroscience-methods
Language:Python 6
ropensci / tacmagic
tacmagic: PET Analysis in R
positron-emission-tomography pet pet-mr neuroimaging r statistics positron mri neuroscience neuroscience-methods
Language:R 5

neuroscience-methods

AdaptiveMotorControlLab / CEBRA

asoplata / open-computational-neuroscience-resources

neurolib-dev / neurolib

kylemath / EEGEdu

MouseLand / rastermap

Mark-Kramer / Case-Studies-Python

JATOS / JATOS

tbrouns / eyestalker

themattinthehatt / behavenet

SchwarzNeuroconLab / DeepLabStream

shlizee / NeuroAI

yulewang97 / ERDiff

bahanonu / imaging_tools

jajcayn / pygpso

PennLINC / CuBIDS

naplab / naplib-python

BrainDynamicsUSYD / NeuroPattToolbox

kevmtan / electroCUDA

phildean / SPM_fMRI_Example_Pipeline

bsotomayorg / SpikeShip

braph-software / BRAPH

hochbaumGroup / HNCcorr

ccli3896 / RLWorms

sahahn / BPt

sync2brain / bossdevice-api-matlab

soheilbr82 / BluegrassWorkingMemory

altunenes / Part-Whole

AminAlam / Dynamics-of-Computational-Neuron-Models

BrainDynamicsUSYD / BrainPalimpsest

cirmuw / EvolutionOfCorticalShape

dpshorten / CoTETE.jl

NathanKlineInstitute / OEvent

sammosummo / Charlie2

nel-lab / mesmerize-napari

neuroinformatics-unit / rsp-vision

ropensci / tacmagic