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Howard Hughes Medical Institute (JaneliaSciComp)

Howard Hughes Medical Institute

JaneliaSciComp

Geek Repo

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

Location:19700 Helix Drive, Ashburn, VA 20147

Home Page:http://www.janelia.org

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Howard Hughes Medical Institute's repositories

bigstream

Tools for distributed alignment of massive images

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:74Issues:6Issues:31

multifish

EASI-FISH analysis pipeline for spatial transcriptomics

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:32Issues:6Issues:47

xarray-multiscale

scalable multiscale image pyramids in python

Language:PythonLicense:BSD-3-ClauseStargazers:26Issues:5Issues:12

pydantic-ome-ngff

Pydantic models for OME-NGFF

Language:PythonLicense:BSD-3-ClauseStargazers:20Issues:6Issues:16

SongExplorer

deep learning for acoustic signals

Language:PythonLicense:BSD-3-ClauseStargazers:20Issues:12Issues:14

BigStitcher-Spark

Running compute-intense parts of BigStitcher distributed

Language:JavaLicense:BSD-2-ClauseStargazers:18Issues:14Issues:23

janelia-unity-toolkit

Packages for the Unity game engine, emphasizing animal studies in VR.

Language:C#License:NOASSERTIONStargazers:15Issues:4Issues:19

awesome-janelia-software

A curated list of awesome Janelia software

License:CC0-1.0Stargazers:14Issues:22Issues:0

JaneliaDataStandards

A pilot experiment to dissminate information about Janelia's biomaging data formats.

Language:HTMLLicense:BSD-3-ClauseStargazers:10Issues:8Issues:7

PyWaveSurfer

PyWaveSurfer is a Python package for reading WaveSurfer data files in Python.

Language:PythonStargazers:9Issues:3Issues:6

UInt12Arrays.jl

Julia package for supporting arrays of 12-bit integers

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jacs-cm

JACS Configuration Management

Language:XSLTLicense:NOASSERTIONStargazers:8Issues:16Issues:32

mipav

MIPAV (Medical Image Processing, Analysis, and Visualization), mirrored from https://citdcbmipav.cit.nih.gov/repos-pub/mipav/

Language:JavaStargazers:5Issues:5Issues:0

EM_recon_pipeline

Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

Language:PythonLicense:BSD-3-ClauseStargazers:3Issues:7Issues:0

tmt

A toolbox of Matlab functions useful for data analysis, especially of electrophysiology data.

Language:MATLABStargazers:3Issues:23Issues:0

G4_Display_Tools

Collection of tools for the G4 LED arena displays.

Language:MATLABLicense:CC-BY-4.0Stargazers:2Issues:5Issues:87

hortacloud-website

Documentation website for HortaCloud

Language:HTMLLicense:BSD-3-ClauseStargazers:2Issues:9Issues:0

colormipsearch

Distributed Color Depth MIP Search

Language:JavaLicense:BSD-3-ClauseStargazers:1Issues:8Issues:0

gpt-semantic-search

Semantic search for Janelia resources using GPT models

Language:PythonLicense:BSD-3-ClauseStargazers:1Issues:4Issues:0

jproxy

S3 Proxy

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ossi-website

Website showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.

Language:AstroLicense:BSD-3-ClauseStargazers:1Issues:3Issues:117

ShroffCelegansModels.jl

Language:JuliaLicense:MITStargazers:1Issues:0Issues:0

dis-utilities

Utilities for Data and Information Services

Language:JavaScriptLicense:BSD-3-ClauseStargazers:0Issues:4Issues:40

neuronbridge-precompute

Utilities for indexing and transferring of NeuronBridge-related files

Language:PythonLicense:BSD-3-ClauseStargazers:0Issues:9Issues:0

doi_common

Library of common DOI-related functions for Python

Language:PythonLicense:BSD-3-ClauseStargazers:0Issues:2Issues:2

easifish

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jacs-storage

JADE file storage services

Language:JavaLicense:BSD-3-ClauseStargazers:0Issues:13Issues:0

jrc_common

Library of common utility functions for Python

Language:PythonLicense:BSD-3-ClauseStargazers:0Issues:4Issues:0

nextflow-modules

Nextflow modules for use with nf-core tooling

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videoAnnotation

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