jfear

ncbi_remap

This is the drosSRA project, where we are remapping all Drosophila melanogaster RNA-seq data to FlyBase release 6 and updating annotations.

s2rnai

S2 Cell RNAi Project

command-line-rust

Code for Command-Line Rust (O'Reilly, ISBN 9781098109417) https://learning.oreilly.com/library/view/command-line-rust/9781098109424/

Deep_diversification_AAV

Bioinformatics code for paper associated with deep diversification of AAV

docker-entrypoint-example

dotfiles

Fish-shell dotfiles

dotfiles.fish

my own dotfiles ported to fish

dotfiles2

My current dotfiles

fastq_set

Tools for working FASTQ files from sequencers (R1/R2/I1/I2)

jfear

my personal profile

justinfear.com

My professional website.

learning-rust-catr

Machine-learning-for-proteins

Listing of papers about machine learning for proteins.

nerdfont-webfonts

Nerd Fonts for cros and hterm

pyhpc

A toy project to help with some debugging

rasusa

Randomly subsample sequencing reads to a specified coverage

rust-bufread

Example showing the benefits of BufRead in Rust

rust-codespace-template

A template to generate rust codespace environment.

rust-data-analysis

Rust for data analysis encyclopedia (WIP).

rust-in-action-code

Source code for the book Rust in Action

rust-test

rust-toolbox

Rust utility code

RustAlgorithms

All Algorithms implemented in Rust

schema-library

SIQ

Sequence Interrogation and Qualification

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

test_deploy

Just a playground to mess with GitHub Actions

UMIC-seq

Nanopore UMI-linked consensus sequencing

wf-alignment

wf-human-sv

Structural variation workflow (and benchmarking) using lra and cuteSV