neuroanatomy-toolbox

There are 1 repository under neuroanatomy-toolbox topic.

• ai-med / QuickNATv2

  Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

  deep-learningneuroscienceneuroanatomy-toolboxbrain-segmentation
  Language:MATLAB 61

• natverse / nat

  NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

  rneuroanatomy-toolboxcranneuronneuroscience3dvisualisationimage-analysisneuroanatomyneuron-morphologyconnectomics
  Language:R 61

• morphonets / SNT

  The ImageJ framework for quantification of neuronal anatomy

  neuroscienceneuroanatomy-toolboximagejimagej2scijavaneuronsjanelia
  Language:Java 38

• natverse / nat.nblast

  R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.

  nblastneuroanatomy-toolboxneuronsneuroanatomymorphological-analysis
  Language:R 16

• natverse / mouselightr

  Bridge HHMI Janelia MouseLight Database and nat R Package

  rneuroanatomyneuroanatomy-toolboxneuroscience
  Language:R 9

• natverse / rcatmaid

  R package providing API access to the CATMAID web image annotation tool

  rcatmaidneuroanatomyneuroanatomy-toolboxconnectomics
  Language:R 9

• natverse / elmr

  Support for working with light and electron microscopy fly brain data

  rneuroanatomy-toolboxneuroanatomy
  Language:R 7

• natverse / fafbseg

  Support functions for analysis of Drosophila connectomes especially the FAFB-FlyWire whole brain

  connectomicsneuroanatomy-toolboxneurosciencer
  Language:R 6

• natverse / flycircuit

  R package flycircuit

  rneuroanatomy-toolboxneuroanatomydrosophilanatverse
  Language:R 4

• morphonets / cx3d

  The Cx3D modeling framework in SciView and SNT

  neuroscienceneuroanatomy-toolboximagej2sciviewmodeling-and-simulation
  Language:Java 3

• natverse / nat.templatebrains

  Support for 3D template brains used as targets for image registration

  rimage-registrationneuroanatomy-toolboxneuroanatomybridging-registrationsnatverse
  Language:R 3

• natverse / neuprintr

  R client utilities for interacting with the neuPrint connectome analysis service

  rneuroscienceconnectomicsneuroanatomy-toolbox
  Language:R 3

• jefferislab / LHlibrary

  A R Shiny app for sharing and viewing lateral horn data

  neuroanatomyneuroanatomy-toolboxrshiny
  Language:R 2

• natverse / nat.flybrains

  Support for Drosophila bridging/mirroring registrations in R

  bridging-registrationsdrosophilanatverseneuroanatomyneuroanatomy-toolboxrtemplate-brains
  Language:Haxe 2

• jefferis / nat.ants

  Bridge neuroanatomy toolbox ('nat') and 'ANTs' registration tools

  image-registrationitkneuroanatomy-toolboxrr-package
  Language:R 1

• natverse / nat.h5reg

  Neuroanatomy Toolbox Support for Saalfeld/Bogovic HDF5 Registration Format

  neuroanatomy-toolboxrneuroscience
  Language:R 1

• flyconnectome / tracerutils

  R tools for EM tracers

  connectomicsneuroanatomy-toolboxneuroscience
  Language:R 0

• jefferis / nat.amira

  Interface Between NeuroAnatomy Toolbox and Amira Visualisation Software

  amiranatneuroanatomyneuroanatomy-toolboxr
  Language:R

• jefferis / r-natverse

  Batteries included docker image for full natverse

  docker-imagenatverseneuroanatomyneuroanatomy-toolboxneurosciencerrstudio
  Language:Dockerfile

• natverse / drvid

  Access to DVID API

  connectomicsneuroanatomyneuroanatomy-toolboxneurosciencer
  Language:R

• natverse / nat.jrcbrains

  Janelia Research Campus Bridging Registrations for Drosophila Brains

  bridging-registrationsdrosophila-brainsjanelianeuroanatomy-toolboxregistration
  Language:R

• natverse / nat.utils

  R package providing utility functions in support of NeuroAnatomy Toolbox (nat)

  neuroanatomy-toolboxnatcran
  Language:R

• natverse / natcpp

  Fast C++ functions for computational neuroanatomy

  computational-neuroscienceneuroanatomy-toolboxr
  Language:C++