sanger-sequencing

There are 1 repository under sanger-sequencing topic.

gear-genomics / tracy
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
chromatogram pcr tracy sanger-trace-alignment sanger-sequencing sequencing variant-calling alignment genetic-engineering pcr-products crispr-cas9 crispr-analysis indel indel-discovery sanger-chromatograms
Language:C++ 96
gear-genomics / dicey
In-silico PCR, primer design and padlock design for in-situ sequencing
gear-genomics pcr primer primer-design in-silico sanger-sequencing amplicon amplicon-sequencing padlock in-situ-sequencing
Language:C++ 41
gear-genomics / indigo
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
indels crispr-cas9 crispr-analysis alignment sequencing sanger-chromatograms indel-discovery indigo pcr gear-genomics pcr-products chromatogram-traces sanger-sequencing alleles variant-calling variants
Language:JavaScript 31
ponnhide / sangerseq_viewer
sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.
sanger-chromatograms sanger-sequencing sanger-trace-alignment
Language:Python 27
BGI-flexlab / SOAPTyping
HLA typing for Sanger Based Test
hla hla-typing sanger-sequencing sbt
Language:C++ 13
gear-genomics / silica
In-silico PCR amplification on complete genomes
gear-genomics pcr in-silico primer-design primer sanger-sequencing amplicon
Language:JavaScript 9
irahorecka / sequencing-primer-generator
A tool to batch-generate optimal DNA primers for Sanger sequencing. Output .xlsx file is directly compatible with IDT Oligo Entry.
desktop-application gui sanger-sequencing plasmid python3
Language:Python 3
evagunawan / SYLENS
SYLENS: Sampling Yielding LEss Noticeable Samples
downsampling fastq fastq-compression fastq-files fastq-format file-conversion sanger-sequencing solexa downsample subsample subsampling
Language:Python 0
sgelias / AbiOrganizer
Extract and distribute ab1 files from Sanger DNA sequencing to folders of their respective owners.
ab1-organizer primer sanger-sequencing sanger-chromatograms
Language:Python 0
JazzEd-EdTech / cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
bioinformatics sequencing cloud ncbi ncbi-blast basespace illumina sequencing-data dna-sequences dna genomics genome workflows pipelines sanger-sequencing whole-genome-sequencing yfull fasta q
Language:Scala
olgatsiouri1996 / sanger_analysis_pipeline
x86-64 Pipeline used to trim and combine sanger raw data to retrieve a consesus read and other results
bioinformatics-pipeline csv fasta sanger sanger-sequencing
Language:Python