alleles

There are 0 repository under alleles topic.

• gear-genomics / indigo

  Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

  indelscrispr-cas9crispr-analysisalignmentsequencingsanger-chromatogramsindel-discoveryindigopcrgear-genomicspcr-productschromatogram-tracessanger-sequencingallelesvariant-callingvariants
  Language:JavaScript 30

• SamueleSoraggi / HMMploidy

  A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models

  genotype-likelihoodsallelesploidy-levelallele-countsploidy-numbers
  Language:R 14
• AgrVATE

  VishnuRaghuram94 / AgrVATE

  Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

  agr-operonagr-groupmummeraureususearchagrstaphylococcus-aureusstaphylococcusframeshiftsallelesoperonquorum-sensingbioinformaticssequencinggenomicstyping
  Language:HTML 9

• sunyatin / ASCEND

  Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

  allelesbottleneckdemographic-inferencedemographic-modelfounder-eventsidentity-by-descentpopulation-geneticspopulation-genomicsancient-dnademographic-history
  Language:Python 7

• ramonamerong / hladownload

  A tool for downloading HLA alleles, epitopes and frequencies

  hlaepitopeepitopesdnafrequencyallele-frequenciesalignmentmultiple-sequence-alignmentmhcallelesdownloadparserpythonpython-modulecommand-line
  Language:Python 4

• chanwkimlab / GAT

  GAT (Generic Genome-Wide Association Tool)

  allelesbioinformaticsgwashlastatistical-analysis
  Language:Python 2

• endreth / jVCFparser

  A command-line parser for VCF files designed for population genetics analyses.

  allele-frequenciesallelesdiversity-analysisdiversity-measuresgeneticsgenotypeheterozygosityhomozygositypopulation-geneticspopulation-genomicsvcfvcf-filesvcf-formatparsingvcfparser
  Language:Java 0

• Lucas-D-Lima / Alleles

  This is simple project to simulate Alleles

  allelesbiologyjavascript
  Language:JavaScript 0

• YujiYashima / ABO-System

  An application that handles and manipulates functions and variables related to the type of blood system: ABO System.

  bloodabo-blood-grouppythonphenotypesgenotypesbiologygeneticsdonorsrecipientsallelesprobability
  Language:Jupyter Notebook 0

• BU-ISCIII / download_bigsdb_api

  Script for interactive download schemas and definitions for any bigsdb installation using its api. Useful for downloading wg/cgMLST genes and alleles.

  allelescgmlst-genesbigsdb-installationbigsdbpython3rest-api
  Language:Python

• vrindajoshi / punnetSquare

  A punnet square calculates the genotypes of the offspring of 2 parents. The punnet square calculates phenotypic frequencies based on dominant and recessive alleles.

  allelesbiologydominantgeneticsgenotypesphenotypesrecessive
  Language:Java

• zkamvar / repvar

  R package to find samples that represent all variables

  rgeneticsmicrosatellitealleles
  Language:R