3d-unet

There are 1 repository under 3d-unet topic.

wolny / pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
semantic-segmentation unet unet-pytorch 3d-unet groupnorm pytorch-3dunet pytorch dice-coefficient volumetric-data 3d-segmentation residual-unet
Language:Jupyter Notebook 1134
pykao / Modified-3D-UNet-Pytorch
This repository implements pytorch version of the modifed 3D U-Net from Fabian Isensee et al. participating in BraTS2017
unet-pytorch 3d-unet unet unet-image-segmentation unet-3d
Language:Python 182
zhengyang-wang / 3D-Unet--Tensorflow
3D Unet for Isointense Infant Brain Image Segmentation
3d-unet segmentation tensorflow
Language:Python 173
pykao / BraTS2018-tumor-segmentation
We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.
deepmedic pytorch pytorch-deepmedic pytorch-3d-unet brain-tumor-segmentaiton brats medical-image-segmentation 3d-unet deep-learning deep-neural-networks
Language:Python 78
frankkramer-lab / covid19.MIScnn
Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data
covid-19 medical-image-analysis covid-19-ct segmentation pneumonia lung-disease infection 3d-unet lung-segmentation medical-imaging lung-lobes computer-vision u-net healthcare-imaging deep-learning tensorflow medical-image-processing
Language:Python 75
JielongZ / 3D-UNet-PyTorch-Implementation
The implementation of 3D-UNet using PyTorch
unet pytorch pytorch-implementation volumetric-data cross-validation 3d-unet semantic-segmentation 3d-segmentation
Language:Python 72
s-mostafa-a / Luna16
Developing a well-documented repository for the Lung Nodule Detection task on the Luna16 dataset. This work is inspired by the ideas of the first-placed team at DSB2017, "grt123".
lung-cancer-detection lung-nodule-detection 3d-object-detection medical-imaging pytorch yolo 3d-preprocessing 3d-unet luna16 data-science-bowl-2017 dsb2017 nodule-net augmentation data-augmentation jupyter-notebook medical-image-processing ct-scan-images paper notebook
Language:Jupyter Notebook 47
fitushar / 3DUnet_tensorflow2.0
This Repo is for implementation of 3D unet in Tensorflow 2.0v
3d-unet 3d-unet-tf2 tensorflow2-3d-segmentation-model binary-segmentation dice-coefficient
Language:Python 19
RawthiL / PET_DeepAttCorrection
Whole Body Positron Emission Tomography Attenuation Correction Map Synthesizing using 3D Deep Networks
3d-unet gan positron-emission-tomography attenuation-map 3d-pix2pix computed-tomography
Language:Python 14
shivangi-aneja / Multi-Modal-Brain-Segmentation
3D Multi-modal (FLAIR and T1) Brain MRI Scan Segmentation using Generative Adversarial Learning
3d-gan 3d-unet brain-segmentation adversarial-learning cnn segmentation semi-supervised-learning
Language:Python 14
kilgore92 / PyTorch-UNet
PyTorch implementation of the UNet model -- https://arxiv.org/abs/1505.04597
unet-pytorch image-segmentation pytorch medical-imaging 3d-unet u-net
Language:Python 11
ShouYuqing / 3D-UNet-for-Segmentation
CNN for segmentation of 3D images
3d-unet mri-images supervised-learning
Language:Python 9
atakehiro / 3D-U-Net-pytorch-model-parallel
PyTorch implementation of 3D U-Net with model parallel in 2GPU for large model
3d-unet pytorch model-parallelism
Language:Python 7
ntamay / segm-kidney-nets
Tutorial of Segmentation of the Kidney
segmentation-kidney u-net 3d-unet medical-image-processing medical-image-segmentation medical-imaging unifesp ita
7
motokimura / kits19_3d_segmentation
PyTorch implementation of 3D U-Net for kidney and tumor segmentation from KiTS19 CT scans.
kits19 ct-scans medical-imaging 3d-unet pytorch 3d-images computer-vision
Language:Jupyter Notebook 5
jphdotam / Unet3D
A 3D Unet for Pytorch for video and 3D model segmentation
3d-unet pytorch unet unet-3d
Language:Python 4
pylattice / pyLattice_deepLearning
Deep Learning on Lattice Light-Sheet Data. Patch-Trained 3D U-Nets for Binary Segmentation. 3 Clear Jupyter Notebooks.
deep-learning lattice-light-sheet jupyter-notebook tensorflow 3d-unet 3d microscopy
Language:Jupyter Notebook 4
anindox8 / Ensemble-of-Multi-Scale-CNN-for-3D-Brain-Segmentation
Fully supervised, multi-class 3D brain segmentation in T1 MRI using an ensemble of diverse CNN architectures (3D FCN, 3D U-Net) with multi-scale input.
brain mri 3d-segmentation deep-learning convolutional-neural-networks cyclic-learning-rate 3d-unet 3d-fcn deepmedic ensemble-learning tensorflow-estimator
Language:Python 3
MohamadZeina / 3D-Patch-Based-Keras-Unet
A modular, 3D unet built in keras for 3D medical image segmentation. Also includes useful classes for extracting and training on 3D patches for data augmentation or memory efficiency.
segmentation keras keras-unet unet unet-image-segmentation unet-keras unet-segmentation deep-learning 3d-unet patch patch-based patch-wise 3d-patch patch-extraction 3d-patch-extraction patch-based-unet keras-tensorflow medical-imaging brats oasis
Language:Python 3
atakehiro / 3D-U-Net-TFLMS-Keras
3D U-Net with tf.keras for Large-Model-Support or Unified Memory
3d-unet tf-keras unified-memory large-network tf-lms
Language:Python 1
duyao-art / 3D-ResUNet-Segmentation
pytorch 3d-segmentation 3d-unet unet-image-segmentation
Language:Python 1
HiEST / DistMIS
Distributing Deep Learning Hyperparameter Tuning for 3D Medical Image Segmentation
deep-neural-networks deep-learning tensorflow raylib distributed hyperparameter-tuning data-parallelism medical-image-segmentation 3d-unet ray-tune distributed-hyperparameter-tuning experiment-parallelism
Language:Python 1
ViiSkor / VolumMedSeg
machine-learning deep-learning colab-notebook computer-vision image-segmentation tensorflow keras-tensorflow colaboratory u-net 3d-unet
Language:Jupyter Notebook 1
eyast / LUNA16
Notebooks that accompany medium articles - Build your own data science portfolio - the LUNA16 challenge.
data-science ct-scans 3d-unet eda portfolio
Language:Jupyter Notebook 0
oriolaranda / DistMIS
Official Repository for the paper: Distributing Deep Learning Hyperparameter Tuning for 3D Medical Image Segmentation
deep-learning deep-neural-networks 3d-unet medical-image-segmentation hyperparameter-tuning distributed data-parallelism raylib ray-tune tensorflow distributed-hyperparameter-tuning experiment-parallelism
Language:Python 0
rekalantar / CT_lung_3D_segmentation
3D Segmentation of Lungs from CT Scan Volumes
3d-segmentation ct-scan-images lung-segmentation covid-19 coronavirus 3d-unet
Language:Jupyter Notebook 0
tamerthamoqa / 3D-mri-brain-tumour-image-segmentation-medical-decathlon-tensorflow
Code repository for training a brain tumour U-Net 3D image segmentation model using the 'Task1 Brain Tumour' medical segmentation decathlon challenge dataset.
tensorflow keras 3d-image-segmentation medical-imaging multi-gpu brain-tumor image-segmentation 3d-unet
Language:Python 0
anwai98 / Brain-Tissue-Seg
Brain Tissue Segmentation on IBSR18 Dataset
nnunet 2d-unet unet brain brain-tissue-segmentation resunet denseunet 3d-unet csf white-matter gray-matter
Language:Jupyter Notebook
james20141606 / NMJ_automatic_pipeline
Use 3D U-net and 2D Link net to predict membrane predition
membrane-prediction segment-prediction 3d-unet
Language:Jupyter Notebook

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