nnunet

There are 0 repository under nnunet topic.

ENHANCE-PET / MOOSE
MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
pet-ct organ-segmentation nnunet 3d-segmentation bone-segmentation tb-pet brain-segmentation fat-segmentation muscle-segmentation psoas-segmentation ct-segmentation total-body-segmentation
Language:Python 267
davidiommi / Pytorch--3D-Medical-Images-Segmentation--SALMON
Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.
segmentation monai organs pytorch unet-pytorch unet unet-3d deep-learning monai-toolbox nnunet transformers unetr mri
Language:Python 123
gaudot / SlicerDentalSegmentator
3D Slicer extension for fully-automatic segmentation of CT and CBCT dental volumes.
3d-slicer-extension artificial-intelligence medical-image-processing nnunet
Language:Python 93
mist-medical / MIST
MIST: A simple and scalable end-to-end framework for 3D medical imaging segmentation.
3d-medical-imaging-segmentation convolutional-neural-networks deep-learning image-segmentation medical-imaging mednext nnunet pytorch swin-unetr unet vision-transformer
Language:Python 44
KitwareMedical / SlicerNNUnet
3D Slicer nnUNet integration to streamline usage for nnUNet based AI extensions.
3d-slicer-extension machine-learning medical-imaging nnunet
Language:Python 34
creatis-myriad / ASCENT
cardiAc ultrasound Segmentation & Color-dopplEr dealiasiNg Toolbox (ASCENT)
deep-learning hydra monai nnunet pytorch-lightning segmentation ultrasound-imaging
Language:Python 32
woctezuma / playing-with-simpleitk
Playing with SimpleITK and nnU-Net to process data from the CHAOS challenge on Google Colab.
simpleitk nnu-net chaos colaboratory colab-notebook colab-notebooks colab colabs nn-unet nnunet segmentation nn-unetv2 nnu-netv2 nnunet-v2 nnunetv2 nn-unet-v2 nnu-net-v2 sitk
Language:Jupyter Notebook 11
RichardObi / pre_post_synthesis
Official repository for "Pre- to Post-Contrast Breast MRI Synthesis for Enhanced Tumour Segmentation"
breast-cancer dce-mri generative-adversarial-network generative-ai image-synthesis mri nnunet pix2pixhd segmentation synthetic-data magnetic-resonance-imaging tumor-segmentation
Language:Python 9
josegcpa / nnunet_docker
Utilities to run nnUNet more easily using containers
docker nnunet wrapper
Language:Python 5
szuboy / paddle-nnUNet
nnUNet paddlepaddle version
medical nnunet paddlepaddle segmentation paddle-nnunet deep-learning
Language:Python 5
aecelaya / gen-surf-loss
Code for implementing and comparing the Generalized Surface Loss to other loss functions
convolutional-neural-networks deep-learning loss-functions medical-imaging nnunet segmentation
Language:Python 4
KanielDatz / UnnUNet
This is the regular nnUNet but with three new features: 1 - Training with cyclic learning rate, producing checkpoints from different convergent minima. 2 - an ensemble of the different checkpoints is used to determine uncertainty of each fold. 3 - On inference prediction is made using the lowest uncertainty prediction from 5 folds.
imaging medical nnunet
Language:Jupyter Notebook 4
rachitsaluja / UCSF-BMSR-benchmarks
nnUNet benchmarks for The University of California San Francisco Brain Metastases Stereotactic Radiosurgery (UCSF-BMSR) dataset.
benchmarks brain data deep-learning nnunet segmentation segmentation-models
Language:Jupyter Notebook 4
high-dimensional / tumour-seg
This is a repository hosting all models detailed in the article Brain tumour segmentation with incomplete imaging data.
deep-learning mri mri-brain mri-segmentation neuroradiology nnunet tumour-segmentation
Language:Python 3
manasikattel / misa
Brain tissue segmentation using several algorithms: EM, Atlas-based methods, nnunet
brain-atlas brain-tissue-segmentation expectation-maximization image-segmentation medical-imaging nnunet segmentation semantic-segmentation
Language:Python 3
anwai98 / Brain-Tissue-Seg
Brain Tissue Segmentation on IBSR18 Dataset
nnunet 2d-unet unet brain brain-tissue-segmentation resunet denseunet 3d-unet csf white-matter gray-matter
Language:Jupyter Notebook 2
mikami520 / AutoSeg4ETICA
A Deep Learning Framework for Analysis of the Eustachian Tube and the Internal Carotid Artery
deep-learning heatmap medical-image-processing nnunet pytorch registration segmentation
Language:Python 2
rachitsaluja / UCSF-ALPTDG-benchmarks
nnUNet benchmarks for The University of California San Francisco Adult Longitudinal Post-Treatment Diffuse Glioma (UCSF-ALPTDG) dataset.
benchmarks brain data deep-learning longitudinal-data nnunet segmentation segmentation-models
Language:Jupyter Notebook 2
RichardObi / SimulatingDCE
Official repository of "Simulating Dynamic Tumor Contrast Enhancement in Breast MRI using Conditional Generative Adversarial Networks"
breast-cancer breast-mri contrast-agents contrast-enhancement deep-learning dynamic-contrast-enhanced generative-adversarial-network generative-ai generative-models mri nnunet pix2pix synthesis synthetic-data
Language:Python 2
ZeinebZH / TumorNetSolvers
3d deep-learning healthcare medical-imaging nnunet pde pytorch simulation tumor vits
Language:Python 2
abdel-habib / IBSR18-brain-tissue-segmentation
Brain tissue (WM, GM, CSF) segmentation using both multi-atlas and nnUNet approaches. This project was developed for a course titled "Medical Image Segmentation and Applications" - MISA under MAIA master program.
ibsr18 maia master medical-imaging misa multi-atlas multi-atlas-segmentation nnunet nnunet-v2 brain-tissue ibsr2018
Language:Jupyter Notebook 1
CBICA / DLICV
A repository that allows users to apply the DLICV method to their brain imaging data.
deeplearning imagesegmentation medical-image-analysis medical-image-processing nnunet
Language:Python 1
nengwp / MTMAUnet
MTMAUNet: Multi-Task Multi-axis Attention UNet
maxvit maxvit-unet multi-task nnunet pytorch segmentation unet
Language:Python 1
VGuoGavin / Pituitary-segmentation-and-classification
The segmentation in this project is conducted through the nnUNet framework, followed by the extraction of pituitary tumor features using the radiomics package. The final step involves designing the classifier using the scikit-learn package, resulting in an achieved classification accuracy of approximately 91%.
classifier nnunet radiomics segmentation pituitary-tumor
Language:Jupyter Notebook 1
jannikobenhoff / organ_calculator
Jannik Obenhoff | Cornell Tech
ct-scans image-segmentation medical-imaging mri-scans nnunet
Language:Python 0
thepanlab / Endoscopic_OCT_PCN_guidance
Scripts used for an upcoming paper "Percutaneous Nephrostomy Guidance by a Convolutional-Neural-Network-Based Endoscopic Optical Coherence Tomography System"
nnunet oct segmentation
Language:Jupyter Notebook 0
Zhang-ycc / Automated-Thyroid-Ultrasound-Reporting-System
Project for CV, SJTU SE
computer-vision nnunet opencv pyqt python reportlab svm
Language:Python 0
Dutta-SD / nnunet_draw
Fork of nnUNet with Custom Logic
biomedical-images nnunet
Language:Python

nnunet

ENHANCE-PET / MOOSE

davidiommi / Pytorch--3D-Medical-Images-Segmentation--SALMON

gaudot / SlicerDentalSegmentator

mist-medical / MIST

KitwareMedical / SlicerNNUnet

creatis-myriad / ASCENT

woctezuma / playing-with-simpleitk

RichardObi / pre_post_synthesis

josegcpa / nnunet_docker

szuboy / paddle-nnUNet

aecelaya / gen-surf-loss

KanielDatz / UnnUNet

rachitsaluja / UCSF-BMSR-benchmarks

high-dimensional / tumour-seg

manasikattel / misa

anwai98 / Brain-Tissue-Seg

mikami520 / AutoSeg4ETICA

rachitsaluja / UCSF-ALPTDG-benchmarks

RichardObi / SimulatingDCE

ZeinebZH / TumorNetSolvers

abdel-habib / IBSR18-brain-tissue-segmentation

CBICA / DLICV

nengwp / MTMAUnet

VGuoGavin / Pituitary-segmentation-and-classification

jannikobenhoff / organ_calculator

thepanlab / Endoscopic_OCT_PCN_guidance

Zhang-ycc / Automated-Thyroid-Ultrasound-Reporting-System

Dutta-SD / nnunet_draw