cobrapy
There are 0 repository under cobrapy topic.
- Language:Python 101
- Language:Python 78
- Language:Python 33
klamt-lab / straindesign
StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
Language:Python 32resendislab / corda
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
Language:Python 21ModelSEED / ModelSEEDpy
Python package for building and analyzing models using ModelSEED
Language:Python 15MetExplore / miom
Constraint-based modeling of metabolism using Mixed Integer Optimization
Language:Python 11- Language:Python 9
biosustain / multitfa
Multivariate thermodynamics-based metabolic flux analysis in Python.
Language:Python 8SBRG / ecolime
Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
Language:Python 4- Language:Python 3
- Language:Python 3
openCONTRABASS / CONTRABASS
Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es
Language:HTML 3- Biosimulators_COBRApy
biosimulators / Biosimulators_COBRApy
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 2 CompBtBs / FalseDiscoveriesAnalysis
Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis
Language:Jupyter Notebook 2diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
Language:Python 2earmingol / cobra_utils
Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.
Language:Jupyter Notebook 1findCP / findCPcore
findCP core package - find ChokePoint reactions in genome-scale metabolic models
Language:HTML 1KBase SDK module for model analysis apps created and managed by the ModelSEED team
Language:Python 1OSS-Lab / FBAhv
FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)
Language:Python 1- quantitative_mutations
pyubero / quantitative_mutations
A class based on COBRApy to handle quantitative mutations on metabolic models.
Language:Jupyter Notebook 1 stolarczyk / metaboLITE
Shiny app for visualization of the toy GENREs
Language:R 1vjz3qz / cancer-metabolic-analysis
Bioinformatics project analyzing cancer metabolism using computational modeling and analysis. The project was awarded the GIDI-UP: Summer Research Award and includes data, models, and scripts.
Language:Jupyter Notebook 1c-mayer / ECMproject
ECMproject is a standalone python program, which enumerates Elementary Conversion Modes (ECMs) of metabolic models.
Language:Jupyter Notebook 0DeepenData / NAMU2021b_old
Proyecto para las redes metabolicas humanas.
Language:HTML 0ElshaymaaAhmed / Build-Model-Task-One
Computational Biology Techniques 2, Glucose Pathway
Language:Jupyter Notebook 0Pathways That Harvest Chemical Reactions
Language:Jupyter Notebook 0gulermalaria / iPfal17_curation
iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
Language:Python 0jackmeersman / ComputationalBiologyResearch
Repository of code and information developed for computational biology research at UGA
Language:MATLAB 0- Language:JavaScript
Docker image for a full ME model stack.
Language:Jupyter Notebooktracykuper / mimics
Multi-scale model of Metabolism In Cellular Systems
Language:Java
