Robaina

BRENDApyrser

A Python parser for the BRENDA database

Pynteny

Query sequence database by HMMs arranged in predefined synteny structure

GenBankpy

Tools to download, parse and filter GenBank files

filterSAM

Tools to filter SAM/BAM files by percent identity and percent of matched sequence

Netflowpy

A python tool to optimize chemical concentration trajectories in network-based chemical systems

Jplaceparser

A python parser for jplace (evolutionary placement) files

MetaTag

metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement

oil_spill_example

pathwayEnrichment

Tools to perform a permutation-based cell pathway analysis

VenusPentagram

A depiction of the Venus Pentagram

modeloEEI

Modelo aplicación web para la enseñanza en secundaria de las Especies Exóticas Invasoras

_2022_ML-ddG-Blaabjerg

Biochemical_KG

bioprospecting

Biosynthetic_Potential

carveme_expanded_universe

CarveMe: genome-scale metabolic model reconstruction

clinical-research-tutorials

Tutorials on commonly used tools in Clinical Research

DeepProZyme

Dokdonia

Source code employed in the study: Gene expression response to temperature acclimation in a model photoheterotrophic marine flavobacterium

fluxOrders

GitHub repository of the article: Flux-based hierarchical organization of Escherichia coli's metabolic network

geoLocation

Playing with HTML5 geolocation API

github-readme-stats

:zap: Dynamically generated stats for your github readmes

gnina

A deep learning framework for molecular docking

Magic-N-gon

Solving the Magic N-gon

micom

Python package to study microbial communities using metabolic modeling.

microcom

Natural-product-function

scripts for predicting natural product activity from biosynthetic gene cluster sequences

Phycogem

Modeling phycospheric metabolic interactions in python

Robaina

UniKP