cryo-et
There are 0 repository under cryo-et topic.
IsoNet-cryoET / IsoNet
Self-supervised learning for isotropic cryoET reconstruction
Language:Python 66FrangakisLab / ArtiaX
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
Language:Python 30ZauggGroup / DeePiCt
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
Language:Python 28MPI-Dortmund / tomotwin-cryoet
cryo-ET particle picking by representation and metric learning
Language:Python 27- TomoBEAR
KudryashevLab / TomoBEAR
TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
Language:MATLAB 26 phonchi / Computational-CryoET
A curated list of awesome computational cryo-ET methods.
brisvag / blik
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
Language:Python 23MLI-lab / DeepDeWedge
Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms
Language:Jupyter Notebook 20logicvay2010 / TomoNet
TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing
Language:Python 11- Language:Kotlin 7
- Language:Python 7
Chlanda-Lab / cryoCLEM
Toolbox for post-correlation cryo-CLEM workflow developed at Chlanda Lab, Heidelberg University.
Language:Java 5hmrishavbandy / SoftLMCCL
PyTorch implementation of "Open-set Recognition of Unseen Macromolecules in Cellular Electron Cryo-Tomograms by Soft Large Margin Centralized Cosine Loss"
Language:Python 4deep-finder / napari-deepfinder
A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
Language:Python 3anmartinezs / poly-GA
Python scritps for rendering and distance analysis of proteins (proteasome) and segmentations (poly-GA aggregates) in Cryo-ET
Language:Python 2Fickincool / master-thesis
Denoising and segmentation networks for cryoET based on U-net architecture implemented in Pytorch
Language:Jupyter Notebook 2mrmattuschka / tomo-spectrum-matcher
A tool to normalize CryoET data by matching amplitude spectrums.
Language:Python 2- Language:Python 2
- Language:Python 2
xueliang4906 / polysome_detect
MATLAB scripts to analyze polysomes formed by ribosomes based on their coordinates and rotations.
Language:MATLAB 2- Language:Python 1
Python package for segmentation and analysis of Cryo-ET
Language:Python 1bwmr / microbiome_morphology
Code and Data related to Wimmer and Morais et al (2023)
Language:R 1- Language:Python 1
- Language:C++ 1
- Language:C++ 1
ZhenHuangLab / imod2relion
A tool reading IMOD points, obtaining particles' info and generating .star file for RELION
Language:Python 1Python scripts to quantiatively describe Arp2/3 complex organization on travelling Actin Waves
Language:Python 0scipion-em / scipion-em-membrain
Plugin to run MemBrain software within Scipion
Language:Python 0tomotools / subtomotools
Some scripts to facilitate subtomogram-averaging workflows.
Language:Python 0wan-lab-vanderbilt / subtomo-tutorials
Subtomogram averaging tutorials
0A tool converting DYNAMO table files(.tbl) to RELION star files(.star)
Language:Python 0builab / DomainFit
A pipeline to detect domains in cryo-EM density map by parsing domains from AlphaFold databases and fitting into the map for the best hits.
Language:PythonTomCrey / CryoCARE_with_GUI
CryoCARE : denoising tomograms for cryo-ET (by @juglab)
Language:PythonMemBrain : Membrane segmentation in 3D for cryo-ET (by @TeamTomo)
Language:Python
