Jalees A. Nasir's repositories
covid-19-signal
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
covid-19-baits
Related files pertaining to a SARS-CoV-2 bait capture platform.
VHost-Classifier
For a list of taxon IDs, VHost-Classifier will filter out the viruses and then sort these viruses into groups based on their host lineage.
BaitFisher-package
The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:
BaitsTools
Software for hybridization capture bait design
hyphy
HyPhy: Hypothesis testing using Phylogenies
hyphy-analyses
HyPhy standalone analyses
iTunes-Backup-Explorer
A graphical tool that can extract and replace files from encrypted and non-encrypted iOS backups
misc-scripts
Miscellaneous scripts built on an "as-needed" basis.
ncov-tools
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
sars-cov-2-workflow-comparison
A collection of workflows for analyzing the SARS-CoV-2 genome.
signal-example-data
Standalone example output from the SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL).
sl
SL(1): Cure your bad habit of mistyping