cryo-em
There are 10 repositories under cryo-em topic.
- Language:C++ 431
- Language:Python 205
tbepler / topaz
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
Language:Jupyter Notebook 165- awesome-cryoem
kuixu / awesome-cryoem
A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
phonchi / Computational-CryoEM
A curated list of awesome computational cryo-EM methods.
Language:Jupyter Notebook 85I2PC / scipion
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
Language:Python 76IsoNet-cryoET / IsoNet
Self-supervised learning for isotropic cryoET reconstruction
Language:Python 63- Language:Python 45
ZhenyuTan / Noise2Noise-Cryo-EM-image-denoising
pytorch implementation of noise2noise for Cryo-EM image denoising
Language:Python 40jewettaij / superpose3d
register 3D point clouds using rotation, translation, and scale transformations.
Language:Python 39- xmipp
Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.
Language:C++ 36 bytedance / cryostar
Leveraging Structural Prior and Constraints for Cryo-EM Heterogeneous Reconstruction
Language:Python 35- Language:C++ 34
- Language:Python 29
FrangakisLab / ArtiaX
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
Language:Python 27cryoem-uoft / cryosparc-tools
Python library that enables scripting access to CryoSPARC, a cryo-EM software package.
Language:Python 26MPI-Dortmund / tomotwin-cryoet
cryo-ET particle picking using triplet networks and metric learning
Language:Python 26kiharalab / CryoREAD
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
Language:Python 25- TomoBEAR
KudryashevLab / TomoBEAR
TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
Language:MATLAB 24 azazellochg / 3DEM-conventions
Conventions for 3DEM software packages
Language:Python 19- Language:Shell 19
haddocking / powerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
Language:Python 19shekshaa / ResidualMFN
Official Pytorch Implementation of Residual Multiplicative Filter Networks
Language:Python 19- Language:Python 17
cswangchen / CS-Learning-Resources
[BS]物联网工程，[MS]计算机技术，python，mooc资源，机器学习，深度学习，cryo-em[冷冻电子显微镜]，3D reconstruction[三维重建]，Computational Vison。
evanseitz / ManifoldEM_Python
ManifoldEM Python suite
Language:Python 15Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning
Language:Jupyter Notebook 15JelenaBanjac / protein-reconstruction
Learning to recover orientations from projections in single-particle cryo-EM
Language:Jupyter Notebook 14PrincetonUniversity / cwf_denoise
Covariance Estimation and Denoising for Cryo-EM Images (Covariance Wiener Filtering)
Language:MATLAB 14homurachan / Block-based-recontruction
Scripts and sources of the block-based reconstruction/refinement in cryo-EM
Language:Python 13DiffModeler: a diffusion model based protein complex structure modeling tool.
Language:Python 13CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The cryoSPARC platform enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.
Language:Python 12DaisukeMiyamoto / aws-parallelcluster-relion
example set up for Relion on AWS ParallelCluster for CryoEM
Language:Shell 12Simulation of cryo-EM ensemble data from atomic models of molecules exhibiting continuous motions
Language:Python 12Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning
Language:Python 12- Language:C 12
